SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for LOC_Os03g29880.1|PACid:21913679 from Oryza sativa v193

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  LOC_Os03g29880.1|PACid:21913679
Domain Number - Region: 313-336
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00439
Family Retrovirus zinc finger-like domains 0.0057
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) LOC_Os03g29880.1|PACid:21913679
Sequence length 962
Sequence
MEFGWALRRPMRLSDSPRHERGLPAALRGVGVKPEVCNQRAAAPSTTVADPPQSLGPLPT
DSPTLVRRTGVEIRKFSQWILHEPKEKWAKAYDTGDARYGIMITNLAEVYNWVMHGVRGL
PLVGIVEFILQGTCRYFRDRFQAVLPSMPNNSILFGTFMQKKLEELRKKAMKHRALVQGT
QQHRFEILCQDKAGRGIYRKRVKQECVLKADGTCHCSCAKPKLLHRPCTHVIAAATECGI
PYAVYVSQYFSKQAVYHTWSGEIYGFGIAGEFTETNNEVLNIPDPSKLRGKAGRRKTRRI
RNDMDESEAGRVKRCSKCNECGHTYKHCPKDKEKPNAAEAGLSGSAANGARPTEIARHDT
PNFYNDILICSCRLREAGLLPMCRLVEAAAGHADPAKRWNVDRSLLAALVDRWRPETHTF
HLPCGEVAPTLQDVSYLLGLPLAGDAVGPVTTGVDWKDDLTARFTPVHRAPHLPLQPLAH
HRNTGPTKRWLLQFIVEQLQAEADEYSYSRCLEAYLLLLFGWVMFCGGHGHAFDKGLVHY
ARSIADAVYRGLCEACTKSDPSTTFGGCPLFLSIWAAERITIGHPEVDQHAYEESLYAER
PEVDYPTMGTLWCRRQRRWAHVQVRRSYPEFVMEFDRLLPTDVVWEPYSAAATQARAPLG
LSTLCTRDHAYWTTTVPMVFDIYVEPHAPFHVMRQFGFRQPFPVPFPTTVPAAVHRVVVD
GSTTIQRLGAGIPIPVEEHLTTYTLMVESMRSILRVLTCRADDVARADAAPQRPPVPTGP
RPTAHVPRPTPPPHEGFRAPFSTPPFLARPSVVPPTGFAQFAMTQAAHFSQAAGSASQAA
ASTSHSAQFWQYIGTSSHAAGTSSQGPPLDHVGTSSDHLVASALLFDITDFDFASGSTED
VIGPSQLRGALPVQTQDQAHATPPPDTRATHAVPPDRFTYSQDHMRAQARRTKRGRGAGQ
GQ
Download sequence
Identical sequences Q10JQ4
LOC_Os03g29880.1|13103.m03422|protein 39947.LOC_Os03g29880.1 LOC_Os03g29880.1|PACid:21913679

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]