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Domain assignment for LOC_Os05g20200.1|PACid:21939040 from Oryza sativa v193

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os05g20200.1|PACid:21939040
Domain Number 1 Region: 786-1215
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.33e-178
Family Reverse transcriptase 0.0000149
Further Details:      
 
Domain Number 2 Region: 1387-1549
Classification Level Classification E-value
Superfamily Ribonuclease H-like 3.04e-42
Family Retroviral integrase, catalytic domain 0.016
Further Details:      
 
Domain Number 3 Region: 677-772
Classification Level Classification E-value
Superfamily Acid proteases 0.0000000000891
Family Retroviral protease (retropepsin) 0.025
Further Details:      
 
Domain Number 4 Region: 614-650
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000335
Family Retrovirus zinc finger-like domains 0.0046
Further Details:      
 
Domain Number 5 Region: 314-323,421-426
Classification Level Classification E-value
Superfamily Formin homology 2 domain (FH2 domain) 0.0000131
Family Formin homology 2 domain (FH2 domain) 0.06
Further Details:      
 
Domain Number 6 Region: 1659-1738
Classification Level Classification E-value
Superfamily Chromo domain-like 0.0000167
Family Chromo domain 0.013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) LOC_Os05g20200.1|PACid:21939040
Sequence length 1756
Sequence
MYPSQCFKFLKFAQQLKCGMVGLGWLGTSWDPGSGCQFGLNHRRPWVKAGNFPGRDTRPL
PEQEGDDAEPHAAWEVTAVILAGSPERTSLTVTAGGDSFPAACQSAALLAIGTLHQRYPD
ELQHSPYRYHPRRGGARDHATFRDASSEDDATIVHLARMVEAYDAARIDFHQMVRRGMVE
NNLKILELRQENLQLKKDLDAVEAQLHQLKIAQGEICRSKRRRVCRSQKITARKSTSRPE
LVRQSLAWTCFVETPRAEPAPVVPQEGEAFGVGSTEDALLLTFRPGPSQRRSANTGDGNQ
PKGSNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMTAFLHHLQNPPQQNAPPPP
PQHSKLAEFLRIRPPTFSSSNNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPAS
LWWDHFQATQPEGQPITWARFTAAFWRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFN
NLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLEAKHKELESH
KRRLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQQQPRSAPRPQFVVRVPQPQQQQNQQ
GTRAPRPPPPTVQPGQGRRDAQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGK
DVIRGRVNHVTAEDVLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVER
LRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKSLDVIVGMNWSSELHQIG
LSEIPIVREFGDVFPEELPGMPPKREIEFRIDLAPGTTPLYKRPYRMAANELAEVKKQLE
ELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLK
GATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVF
MEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGH
VISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLKKE
EKFVWSPQCEKAFQTLKEKLVSSPVLILPDTHKDFMVYCDASRQGLGCVLMQDGHVVAYA
SRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQR
RWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNVRGIPPELNQMMEALNLSVVSRG
FLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPDNR
ELKQLILQEAHESPYSIHPSSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQR
PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNK
LAELYYARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQIDGQTERL
NQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGCKCRTPLMWDQV
GESQVFGTDILREAEAKVRTIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRG
VHRFRTKGKLAPRYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQA
DSEQIEVREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAH
PDLFASSSESRGRDSV
Download sequence
Identical sequences LOC_Os05g20200.1|13105.m02136|protein LOC_Os05g20200.1|PACid:21939040 39947.LOC_Os05g20200.1

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