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Domain assignment for LOC_Os05g48170.1|PACid:21939745 from Oryza sativa v193

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os05g48170.1|PACid:21939745
Domain Number 1 Region: 421-533
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.52e-31
Family Retroviral integrase, catalytic domain 0.0041
Further Details:      
 
Domain Number 2 Region: 735-957,985-1048
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 4.45e-22
Family Reverse transcriptase 0.047
Further Details:      
 
Domain Number 3 Region: 195-237
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000000144
Family Retrovirus zinc finger-like domains 0.0026
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) LOC_Os05g48170.1|PACid:21939745
Sequence length 1099
Sequence
MSRIRRIARHFRPSCERCRLRLSGRSPRRTVPKTPGTRSNPCEWAQIVLRSPEHRSCAKL
LSPCDSRMANTWRISAFVSRVLSAIFVSLEMICLKRRLFEKLLRVVPRRYRQMALSIETL
IDLTSLSIEDLTGRLLTVDDHPDSDGEDAGQALFSEKEASSHSNKEAGHNSAGGSASSSR
QPHRSGRRRDGNGSDGKSGSSQAASRNVSKDKCRYCGKLGHWAKDCRKAKRDREKLAQAN
LLIAEPAHPADEGEPTLLMAQVCELAPATDSVITDGELDTTVRGTVKFGDASRVRIKGRG
TVLFACKNGDHCALTGVYYIPNLRSNMVSLGQLDEARCKTVIEDGVLTLRDSQRRLLCRV
RRGTGCLYVLHVELAQPVSLLAKGNDQAWVWHARYGHLNFDALRSLASRGMARDIPTLER
VTQAGVEVETGCKLRVLRTDRGGEFTSVEFGLYCANEGVARQLMAPYSPQQNGVVERRNQ
TVVAMARCMMKAKNMPGEFWGEAVTTAVYILNQAPTKSVRDKTPFEAWHGRTPAVHYFRT
FGCIVYVKEVKPHINKLDDRSKAMVFLGYEPGSKAYRIYDPVAKRIVVSHDAVFDKAASW
PWASPGEEDGVASSQETFTVRYEVAAVEVPSRHSDSMSSPAHSGPPAPSISASPGVPAVE
FVSPPAETPDVDDDNVGPRRFRTVANILDTTSPIELDSDELHLAAAEEPSNHTEAAQDTL
WQRAMQEELKSIVENNTWTLADLPAGKRPIGLKWVFKLKKDETGVIVKHKARLVAKGYVQ
QQGIDFDEVFAPVARMESVRLLLAIAAHLGWFVHHMDVKSAFLNGELEEEVYVAQPPGFV
DDKHPHQVLRLNRALYGLRQAPRAWNAKLDVSLHELGFTRGITEHAVYTRGTGNARLIVG
VYVDDLIITGAHSETIQSFKGEMHSLFRMSDLGLLSYYLGIEVHQGNDGITINQSTYAQK
LLKMGGLAGCNSACVPMEPRLKLTKNSDRPSVDSTFYRSLVGSLRYLVHSRPDIAFAVGY
FSRFMESPRDDHLTAVKHILRYVAGTVNYGCKFAHSGEEGIHLLGFSDSDLGGDVDDRKS
TSGALFFLGSSPVAWQSQK
Download sequence
Identical sequences LOC_Os05g48170.1|13105.m05113|protein LOC_Os05g48170.1|PACid:21939745 39947.LOC_Os05g48170.1

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