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Domain assignment for LOC_Os06g01534.1|PACid:21930499 from Oryza sativa v193

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os06g01534.1|PACid:21930499
Domain Number 1 Region: 613-1021
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.67e-160
Family Reverse transcriptase 0.0000115
Further Details:      
 
Domain Number 2 Region: 1214-1370
Classification Level Classification E-value
Superfamily Ribonuclease H-like 8.5e-44
Family Retroviral integrase, catalytic domain 0.012
Further Details:      
 
Domain Number 3 Region: 464-570
Classification Level Classification E-value
Superfamily Acid proteases 0.00000000000000143
Family Retroviral protease (retropepsin) 0.032
Further Details:      
 
Domain Number 4 Region: 378-412
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000602
Family Retrovirus zinc finger-like domains 0.0044
Further Details:      
 
Domain Number 5 Region: 1485-1563
Classification Level Classification E-value
Superfamily Chromo domain-like 0.00000314
Family Chromo domain 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) LOC_Os06g01534.1|PACid:21930499
Sequence length 1571
Sequence
MASRPRRAARAPARFGFEDGRVEPEENHESANEQSRRSNRSHRTASRNAEVEQPRRGSRS
HRAVSRDAEMEQSHRSHRTASHNSGEERLPSPPHVENNMQHIMAVQTQILQGLTTAIASF
QHNAHGNGHPHVGNNRSKLTDFLRSRPPEFSQTVEPVEADDWLKDVDRKLNLVQCTPVEK
TLYASHQLRGPAADWWENYCNAHPEPTNIAWDEFATAFRAAHVPESTIDMKKEEFNRLKQ
GNSSVNEYLSQFNKLARYAPEEVDTDKKKIRKFLKRIAVGMRLQLLAHDFPTFQHMINKA
LLLEDARKEATEEYKKRKSNHQGNSSRGTPRPRYGQPMQYHQSVTQANRQPGYAPRPQMN
RPTPPPQQCAPSGNTAPNSVTSFNSPQGPSVVQCFRCNQMGHYARQCPQNPTNTNLGHAN
GSIAKTPTPAAAQSRPSSQASGQGSRASNHFGRGRVNHIQAETAQDAPDVVMGMFSVNSV
PAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQICPEVNLKIEEVD
FLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAEKSITLQGPGGKQVRFTPNTPTASRSIL
TSLQVTSLESVPIVCEYPDVFPEELTSMPPDREIEFAIELAPGTAPIAKRPYRMAANELA
EVKRQIEELESKGYVRPSSSPWGAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRID
DLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRYGLYEFTVMSFGLTNAPAFFM
NLMNKIFMEYLDQFVVVFIDDILIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKWEFWLD
RVAFLGHVISSNGVEVDPSKVEAVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKLARPM
TELLKKEKKFHWSTACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLGCVLMQE
RKVVAYASRQLRPHEVNYPTHDLELATVVHALKIWRHYLIGNRSNVVADALSRKAYCNIA
QIRPDQDHLCRELEKLRLTVVQSGVPASLTVQPTLESQIREAQKDDEGIKELIKRIQEKK
DTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYSIHPGSTKMYQDIKAYFWWVG
MKRDVTEYVALCDICQRVKAEHQRPAADSHDSASRLLPAKVEIGSLESHLGSPAEPAKGG
LRGLPVRSPTLRHLPIPEWKWEEIGMDFITGLPRTPNGYDSIWVIVDRLTKSAHFVPVKT
TYDGKKLAELYMTHVVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTD
GQTERVNQILEDMLRACALDFEGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRKCRTP
LCWNEVGEALVFGPDILKSAEEQVKLIRERLKTAQNRHKNYTDNRRRDLEFEKGDHVYLR
VSPLRGMRRFGMSGKLAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLR
VPEEQVPLGNIELEKNLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSEDEATWERED
LLRAEFPDLLP
Download sequence
Identical sequences LOC_Os06g01534.1|PACid:21930499 39947.LOC_Os06g01534.1 LOC_Os06g01534.1|13106.m00057|protein

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