SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for LOC_Os08g22110.1|PACid:21886691 from Oryza sativa v193

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  LOC_Os08g22110.1|PACid:21886691
Domain Number 1 Region: 207-581
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.11e-152
Family Reverse transcriptase 0.0000293
Further Details:      
 
Domain Number 2 Region: 44-82
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000262
Family Retrovirus zinc finger-like domains 0.0036
Further Details:      
 
Weak hits

Sequence:  LOC_Os08g22110.1|PACid:21886691
Domain Number - Region: 799-847
Classification Level Classification E-value
Superfamily Chromo domain-like 0.00113
Family Chromo domain 0.011
Further Details:      
 
Domain Number - Region: 101-148
Classification Level Classification E-value
Superfamily Acid proteases 0.00225
Family Retroviral protease (retropepsin) 0.028
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) LOC_Os08g22110.1|PACid:21886691
Sequence length 859
Sequence
MIVRQHRPFNSSSFHQGASGSQNNPGGQPNSSAAPRPPMATTQAAPSVQGKKDTGAKPGS
CFNCGEHGHFSDKCSKPRRAGPRFCPSSCQPRIRRRGTSSTRGRTGPSVTIEIRRSPFLA
NLILLESKDLDVILGMDWLTKFKGVIDCVNCTVTLTNKKGETVVYKSPVALKQGISLNQI
EVENPVVTEERSSRKLEDIPIVCEYPERPYRMAANELAEVKKQVDEQLQKGYIRPSTSPW
DAPVIFVEKKDKTKRMCVDYHALNEVTIKNKYPLPRIDDLFDQLKGAKDIPKTAFTTRYG
LYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVLVFIDDILIYSKSEEEHEHHLRLVLE
KLQEHQLYAKFSKCDFWLSEVKFLGHVITAQGVAVDPSNVESVTKWTPPKTVSQIRSFLG
LAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAECDKSFEELKKKLVSAPVLILPDQTKD
FQVYCDASRHGLGCVLMQEDRVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIS
NRCEVYTDHKSLKYIFTQPDLNLRQRTWLELIKDYDMSIHYHPGKANVVADALSRKSYCN
ALCTEGMCKELQQELEHLHLGIVEHGYVVALEARPTLVDQVRAAQVNDPEIAELKKNIRV
GKARDFLEDEHGTIWLGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWW
ARMRREIAEFVALCDVCQSAQDIIGPRFNLGSRGSTYQSCSFHSSAYYLYGQKKCLRVPE
EQADSDHIDIREDLTYVEKPVRILETSERRTRNKVTRFCKVQWNHHSEEEATWEREDELK
NAHPHLLASSSESRGRVSV
Download sequence
Identical sequences Q6UUL1
LOC_Os08g22110.1|13108.m02272|protein 39947.LOC_Os08g22110.1 LOC_Os08g22110.1|PACid:21886691

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]