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Domain assignment for LOC_Os10g04740.1|PACid:21882688 from Oryza sativa v193

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os10g04740.1|PACid:21882688
Domain Number 1 Region: 311-446
Classification Level Classification E-value
Superfamily Ribonuclease H-like 9.86e-30
Family Retroviral integrase, catalytic domain 0.0042
Further Details:      
 
Domain Number 2 Region: 654-766,796-961
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 0.000000000000534
Family Reverse transcriptase 0.057
Further Details:      
 
Weak hits

Sequence:  LOC_Os10g04740.1|PACid:21882688
Domain Number - Region: 3-35
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00209
Family Retrovirus zinc finger-like domains 0.0057
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) LOC_Os10g04740.1|PACid:21882688
Sequence length 963
Sequence
MNNARNRKRGGPNRCFECGSVDHLRSHCRKLRRGKREDKDGEKTNNNKPKGTSQGRKFKE
NLRKVFDQVYAAFEPLSDVDGECGDEDKGKNISSVCFMARGESDTEYEDHEALVARKKNV
WIVDFGCSRHMTGDKNWFFSLKKPSKTESIIFGDTSISAVLATGSVKVNEKFELKNVALV
EDLKYNLLSVSQIVDEDFEVHFKKTGSKVFDSCGDSVLNISRCGRVFKADFENPVSPMIT
CLVAKFDKDVMFWHHRLGHVGFDHLTRLSGLDLVRGLPKLKKDLDLVCTPCRHAKMVSTS
HAPIVSVMTNAPGQLLHMDTVGPARVQSVKESDFEFSGSLKRIRSDNGGEFKNTFEQFCN
ERGLEHEFSSPRVPQQNGVVERKNRVLVEMAKTMLDEYKTPRKFWAEAINTACYISNRVF
LRSKLGKTSYEFRFGHQPKVSHLCVFGCKCFVLKSGNLDKFEARSTVGLFLGYPAHTRGY
RVLILETNKIVETCEVSFDEASPGTRHDIAGTLLQVQGEDGRIFGDENDNDNDDDEVGSA
GQTRRQAGQTAGTPPVRPPQEERSDRPGSSGSGTVDADRDGPPEITTSTSTDTGRGSTSE
VAAALHIQRRHPPEQIIGNIGERTTRSKVEGLDFDETFAAVARIEAIRLLLAFAASKGFK
LYQMDVKSAFLNGSIQEEVYVKQPPGFTKGKVDKTLFVLKHGDNQLFVQIYVDNIIFGCS
THALVVDFAETMRREFEMSMMGELLYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMEKCK
PISTPIGSTAVLDPDEDGEAVDQKEYRSMIGTLLYLTASRPDIQFVVCLCARFQASPRAS
HRQPVKQIMRYLNHTLEFGIWYSTSSSICLSGYFDADFGGCRIDRKNTSGTCHFLGTSLI
VWSSRKQSSVAQSTAESEYVAAASCCSHIFWLLSTLKDYGLTFEKVPLFCDNISAINIAK
NLL
Download sequence
Identical sequences Q9AYH4
39947.LOC_Os10g04740.1 LOC_Os10g04740.1|PACid:21882688 LOC_Os10g04740.1|13110.m00391|protein

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