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Domain assignment for LOC_Os04g26660.1|PACid:21895574 from Oryza sativa v193

Domain architecture


Domain assignment details

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Strong hits

Sequence:  LOC_Os04g26660.1|PACid:21895574
Domain Number 1 Region: 837-1237
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.33e-160
Family Reverse transcriptase 0.0000498
Further Details:      
 
Domain Number 2 Region: 1350-1510
Classification Level Classification E-value
Superfamily Ribonuclease H-like 4.17e-43
Family Retroviral integrase, catalytic domain 0.014
Further Details:      
 
Domain Number 3 Region: 693-797
Classification Level Classification E-value
Superfamily Acid proteases 0.0000000000000326
Family Retroviral protease (retropepsin) 0.024
Further Details:      
 
Domain Number 4 Region: 630-666
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000000272
Family Retrovirus zinc finger-like domains 0.0046
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) LOC_Os04g26660.1|PACid:21895574
Sequence length 1679
Sequence
MEVDEVGGRWTFSRANEGYTSCGPVVEMSWHRAGVLLLGAQSCLPVPGVPAVGGIGSVLL
SMARMGWKLCHVFRLYTVVMAGSVTRRGLDMTGFVLELRGMCVVLGYPHGVDYQARPLPE
QEGEDAEPHAGWEVTAVILSGSPERTSLAVTAGGDSFPAACQNAALLAIGTLHQHYPDEL
QHSPYRYHPRRGGARDYATFRDASSEDDATIVHLARMVEAYDAARIDFHQMVRRGMVENN
MKILELRQENLQLKKDLDAVEAQLHQLKIAQGEDCRPKRLPQPEDHRPQEHLQARACSSV
PGVDLLRRDPSCRACARGSPGGGNLRRWRNVNTGDGNQPEGSNPNHQGNPPPPPPPPPPP
PPDTNAILTQILAQQANMMTAFLHHLQNPPQQNAPPPPPQHSKLAEFLRIRPPTFSSSNN
PVDALDWLHAVGKKLDTVQCSDEEKATQPEGQPITWARFTAAFRRTHVPAGVVALKKREF
RELKQGNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQR
LVDKSIRLEAKHKELESHKRRLANFRNQQGANQRVRYTNPYPGGSSSQQQQQQPRSAPRP
QFVVRVPQPQQQQNQQGTRVPRPPTPAVQPGQGRRDAQGQQRLCFNCFEPGHFADKCPKP
RRQQGQAPPRSNNGGKDVTRGRVNHVTAEDVLTTPDVIVGTFLIHSVPATTLFDSGASHS
FISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYYSPAVPIEIQGIPFPSDLILLDTKNL
DVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFAPPTSVRSSELHQIGLSEIPIVGE
FGDVFPEELPGMPPKREIEFRIDLAPGTTPLYKRPYRMAANELAEKKDKTKRMCVDYRAL
NEVTIKNKYPLPRIDDLFDQLKGTTVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYEF
TVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLRE
HQLYAKLSKCEFWLSEVKFLGHVISAEGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGY
YRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVY
YDASRQGLGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCE
IYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNA
RGIPPELNQQMEALNLSIVGRGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAA
GFTEDEHGTLWNGNRRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIW
VVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQE
ELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQAS
IQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRIIRDNLKVAQSRQKSYAD
NRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIIARRGEVAYQLELPASL
GNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLTYVERPMKILDTMERRTRNRVIRFC
Download sequence
Identical sequences Q6MWI9
LOC_Os04g26660.1|PACid:21895574 LOC_Os04g26660.1|13104.m02524|protein 39947.LOC_Os04g26660.1

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