SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Bra000893 from Brassica rapa Chiifu-401 1.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Bra000893
Domain Number 1 Region: 246-341
Classification Level Classification E-value
Superfamily TPR-like 0.000000000184
Family Tetratricopeptide repeat (TPR) 0.03
Further Details:      
 
Domain Number 2 Region: 391-429
Classification Level Classification E-value
Superfamily Chaperone J-domain 0.00000688
Family Chaperone J-domain 0.0043
Further Details:      
 
Weak hits

Sequence:  Bra000893
Domain Number - Region: 18-76
Classification Level Classification E-value
Superfamily TPR-like 0.000531
Family Tetratricopeptide repeat (TPR) 0.036
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Bra000893
Sequence length 539
Sequence
MAVYGEKKHWWLRNKKIVDKYMKEAKNLIASKDPNDVESALSLLESALSVSPRYELALEL
KARSLLYLRRFKDVADMLHDYIPSLKFPGEDSGIGSSELSSTHSSRESVNLLNDLPNHGG
DSSFKCFSVSDLKKKVMAGLSKNCNEQGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT
AAFRRQSISLSDDSFILFSPTHGGSSSPPPSSVVVSSSSQPRSLTESESVAHMLSHIKLL
LRRRAAALAALDAGLYSESIRHFSKILDSRRAAPQGFLAECFMHRASAYRSAGRIAESIA
DCNKTLALEPSCLQALETRAALLESVRCFPDSLHDLEHLKLLYNSILRDRKLPGPVWKRH
NVRYREIPGKLCVLTSKTQQLKEKIASGETGNVDYYALMGIRRDCSRSELDRAYLLLNLK
HKPERSMSFIDRFELTEGEEELDSVKDRARMSTLLLYRLIQRGYSVVTSNIATEQEAEKQ
RKAAAVAATETHRSNNIETPIRASVVKGVFCRDLTVVGNLIARTGFNQPIPVKYEALSC
Download sequence
Identical sequences M4C9L4
Bra000893 XP_009134446.1.100322

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]