SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Bra015382 from Brassica rapa Chiifu-401 1.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Bra015382
Domain Number 1 Region: 192-496
Classification Level Classification E-value
Superfamily L domain-like 5.78e-56
Family Polygalacturonase inhibiting protein PGIP 0.0005
Further Details:      
 
Domain Number 2 Region: 63-240
Classification Level Classification E-value
Superfamily L domain-like 1.16e-28
Family Polygalacturonase inhibiting protein PGIP 0.027
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Bra015382
Sequence length 544
Sequence
MTLHVFSCLFALIFLVNTLVSLPSRRLEQVESLLSFKNEFLLSCNKSVTNSWNRDAIAFD
GVLFDKDTGGVTELKLRGACLSGTLDANSSLFKLYQLRYLDLSRNNISSSLPAEFGRLAD
LEFLDLHQNRFTGELPSSMSNLGLANTTVLTKLHFLDISNNKFQGKVSEWLWNLPSLTAT
NLSHNSFDSFPNISPTVKYLVASNNNFTGEIPLSLCNPRNLLVLELSNNSLTGAVPRCLS
ESITVLNLRRNNLTSLPDTFSNSSLKMLDVGHNQISGKLPRSLEHCKGLEFVDVESNRVD
DTFPFWLKDLPNLTALILGSNRFYGPIYSPQYPLTFSKLRIIDISRNMFDGSLPPNYFVN
WSAAISSSSRLEYGRPRVKLLNTYGSIDFSGNRFGGEIPESIGLLKSLLALNLSNNGFTG
HIPSSLANLTELESLDISRNQLSGTIPQELGKLSFLSYINMSFNKLTGEIPQGTQFQTQN
ESAFEGNIDLCGFPLQKSCSMANVSSHASKPMHNLNSRKPLLLFSFLIVFHFVLSFSFPL
STSL
Download sequence
Identical sequences M4DFV9
Bra015382 XP_009119212.1.100322

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]