SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSCJAP00000024154 from Callithrix jacchus 76_3.2.1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSCJAP00000024154
Domain Number 1 Region: 257-287
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.00000184
Family CCCH zinc finger 0.0037
Further Details:      
 
Weak hits

Sequence:  ENSCJAP00000024154
Domain Number - Region: 56-78
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.0275
Family CCCH zinc finger 0.0056
Further Details:      
 
Domain Number - Region: 711-764
Classification Level Classification E-value
Superfamily RING/U-box 0.0371
Family RING finger domain, C3HC4 0.024
Further Details:      
 
Domain Number - Region: 608-678
Classification Level Classification E-value
Superfamily Tropomyosin 0.0654
Family Tropomyosin 0.0081
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSCJAP00000024154   Gene: ENSCJAG00000013151   Transcript: ENSCJAT00000025551
Sequence length 765
Comment pep:known_by_projection chromosome:C_jacchus3.2.1:12:1421653:1477039:-1 gene:ENSCJAG00000013151 transcript:ENSCJAT00000025551 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
FRYLKEFRTEQCPFSQHKCAQHRPFTCFHWHFLNQRRRRPLRRRDGTFNYSPDVYCSKYN
EATGVCPDGDECPYLHRTTGDTERKYHLRYYKTGTCIHETDARGHCVKNGLHCAFAHGPL
DLRPPVCDVRELQAQEALQNGQLGSGDGVPDLQPGVLASQAMIEKILSEDPRWQDASFVL
GSYKTEQCPKPPRLCRQGYACPHYHNSRDRRRNPRTFQYRSTPCPSVKHGDEWGEPSRCD
GGDSCQYCHSRTEQQFHPEIYKSTKCNDIRQTGYCPRGPFCAFAHVETPPRDDGDKAACA
WPSHVVRRLLRVTVAHQPPPVLAESLGMVNDCCRDLHPGSPASTGSSQPGNVSEWLRLRF
DAVVGSGSAVLAPGLHVDQPRSTQENRRGASRFRRLFCFMGLQHLACCCTHPGAGQSPLL
QTTQNHLAVFAAAHPPAPSVSSSVASSAGSGSSSPTALPVPPAGSTVEAVLGTSFSEMAL
GGRRALQGTQRLQVTPPPRALVLGPACFTGVSPEPPQVQVGRAGSAGQRGGSGAIRLKTP
VPFCPRPPASSARDPDLGGGAEGNTLSLSGVPGSIWDFVSGSFSPSPSPILSSGPSSSSG
ANPNGAELARVRRQLEEAKRKIRQWEESWQQVKQGCDACQREAQEPNERARVADSERELA
LHRKEEVEAQVKQLQEELEGLGVASALPGLRGCGDVGAIPLQKLHSLQSQLRLDLEAVDG
VIFQLRTKQCVACRERAHGAILRPCQHRVLCEPCAASAPECPYCE
Download sequence
Identical sequences F7D987
ENSCJAP00000024154 ENSCJAP00000024154

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]