SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSGMOP00000017586 from Gadus morhua 69_1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSGMOP00000017586
Domain Number 1 Region: 15-112
Classification Level Classification E-value
Superfamily SWIB/MDM2 domain 1.27e-40
Family SWIB/MDM2 domain 0.0000839
Further Details:      
 
Domain Number 2 Region: 294-337
Classification Level Classification E-value
Superfamily Ran binding protein zinc finger-like 5.3e-18
Family Ran binding protein zinc finger-like 0.00034
Further Details:      
 
Weak hits

Sequence:  ENSGMOP00000017586
Domain Number - Region: 437-479
Classification Level Classification E-value
Superfamily Cysteine-rich domain 0.00785
Family TFIIH p44 subunit cysteine-rich domain 0.023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSGMOP00000017586   Gene: ENSGMOG00000016389   Transcript: ENSGMOT00000018018
Sequence length 492
Comment pep:novel genescaffold:gadMor1:GeneScaffold_61:25194:29166:1 gene:ENSGMOG00000016389 transcript:ENSGMOT00000018018 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
FNMSSISPQPLSSCRTLPGEGSPVQPKAPLLQILRVAGAQENVFTLKEVMHYLGQYIMGR
QLYDKQRQHIVHCQDDPLGELLEVDSFSVKNPSPVYEMLKKHLVVVGASRNADAAENLSL
GRECVESGVEDRGQVKQKHGARKKQKPIRCHPTTHNTPSQRRPRECDQDSLDGLPRSACK
RPKLDVTLDEWDLSGLPWWFLGNVGSNHSRRSNGSTDIVTNRERDTAAVSDATGDDLWFL
EEGEGEGVSVEMKEAALEAGGRGEGEGLPEGTGAGKEDKADGEEEPDEDSQCLSDDTDTD
VSTQDAWQCTECKKYNTPLQRYCVRCWALRKDWYKDVPLLAHALSVPDIPSRGSFGSPDK
EDDSDAGLDVPDCSRTVSDPVVLPSHCRPDRSLPTLGSALGKGPLAFGLTKRPCRGASQE
SVGMEMEVEVRPEALLEPCQLCQVRPRNGNIIHGRTAHLITCYTCAKRLHKSHAPCPGCG
KIIQRVIKIFVI
Download sequence
Identical sequences ENSGMOP00000017586 ENSGMOP00000017586

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]