SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for ENSGMOP00000020175 from Gadus morhua 69_1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSGMOP00000020175
Domain Number 1 Region: 699-837
Classification Level Classification E-value
Superfamily TNF-like 2.28e-29
Family TNF-like 0.0017
Further Details:      
 
Weak hits

Sequence:  ENSGMOP00000020175
Domain Number - Region: 47-116
Classification Level Classification E-value
Superfamily Spectrin repeat 0.0416
Family Spectrin repeat 0.012
Further Details:      
 
Domain Number - Region: 578-639
Classification Level Classification E-value
Superfamily Coronavirus S2 glycoprotein 0.0837
Family Coronavirus S2 glycoprotein 0.0078
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSGMOP00000020175   Gene: ENSGMOG00000018774   Transcript: ENSGMOT00000020673
Sequence length 838
Comment pep:novel genescaffold:gadMor1:GeneScaffold_484:57245:69313:1 gene:ENSGMOG00000018774 transcript:ENSGMOT00000020673 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence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Download sequence
Identical sequences ENSGMOP00000020175 ENSGMOP00000020175

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