SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|428219538|ref|YP_007104003.1| from Pseudanabaena sp. PCC 7367

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|428219538|ref|YP_007104003.1|
Domain Number 1 Region: 312-624
Classification Level Classification E-value
Superfamily Pectin lyase-like 7.14e-25
Family Galacturonase 0.059
Further Details:      
 
Domain Number 2 Region: 3-346
Classification Level Classification E-value
Superfamily Pectin lyase-like 2.89e-24
Family Galacturonase 0.017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|428219538|ref|YP_007104003.1|
Sequence length 806
Comment polymorphic outer membrane protein [Pseudanabaena sp. PCC 7367]
Sequence
MAVINVTTTLDENDGGLGLGAGDSLREAIIEANTNADAVDTINVIGGLTYTLTLGAGDNS
AAMGDLDINDLVLANTNITIQSTGVGNATIDASGLAGDRVFDVRNGDATVNFIGLTITGG
DAGTRGGGVRLVDNATLNVTDSMIVGNTAANNGGGIGGRDGNTINITNSTISTNTATNAD
GGGIRFRDNSNLTVTGSTINSNIADDDGGAIGGRDGNTITITDSTISDNTATNDEGGGIR
LRNDGSIMVTETEISNNTAGGDGGGIHGNNGNDIVITSSQITGNSAVNSGGGIHSYDASG
MNANPSLTIIDSQISGNTAADGGGGGVYVEGFHTVMITNSQINDNSASEAGGLQTDNDNT
VEITNSQISGNTADNNGAGFYADFTNVVTITDSTISGNTSSGDAGGVYIFTGNIFTITGS
TISGNSADGDGGGLFFDASGNTATIINSTISGNSASNEGAGIFIEDTNNNLTISHATIAF
NDATTAGGGIFIDDATTTITIDNTIVAMNMAPTGPDIDNTAGGTINSEGFNIIGDNSDVA
ADFPAGIPNANDDFVGTAMDPIDPGLAPLADNGGPTQTHALGDGCSLAINNGDPNFVAPP
DFDQRGMGFDRVFGGRIDIGAFELQNSAGVVVFGNTSFGTPNPDTIVGDANNNTINGNGG
DDSLFGSDGIDRVNGGLGNDFLGGGLGNDFLNGGAGNDTMDGACGGTGTGEFDRLTGGGG
AGADTFILGASFGSYYLGNGDADFAYISDFNSGVDTIVLNGMLADYTFVPNTTVNNLTGQ
GIFNGGDLVAIVQQQMINTVTDLVFV
Download sequence
Identical sequences K9SN54
WP_015166529.1.5078 gi|428219538|ref|YP_007104003.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]