SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for gi|4504975|ref|NP_000518.1| from Homo sapiens

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|4504975|ref|NP_000518.1|
Domain Number 1 Region: 398-661
Classification Level Classification E-value
Superfamily YWTD domain 2.75e-49
Family YWTD domain 0.0000000000968
Further Details:      
 
Domain Number 2 Region: 283-394,666-711
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.00000000000000314
Family Growth factor receptor domain 0.015
Further Details:      
 
Domain Number 3 Region: 103-144
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000157
Family LDL receptor-like module 0.0001
Further Details:      
 
Domain Number 4 Region: 142-183
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000314
Family LDL receptor-like module 0.00011
Further Details:      
 
Domain Number 5 Region: 26-70
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000115
Family LDL receptor-like module 0.00011
Further Details:      
 
Domain Number 6 Region: 196-232
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000196
Family LDL receptor-like module 0.00013
Further Details:      
 
Domain Number 7 Region: 66-104
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000393
Family LDL receptor-like module 0.0000954
Further Details:      
 
Domain Number 8 Region: 234-272
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000072
Family LDL receptor-like module 0.00012
Further Details:      
 
Domain Number 9 Region: 274-311
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000838
Family LDL receptor-like module 0.00011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|4504975|ref|NP_000518.1|
Sequence length 860
Comment low-density lipoprotein receptor isoform 1 precursor [Homo sapiens]
Sequence
MGPWGWKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ
ETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGK
CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW
PQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDE
FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMAR
DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD
PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYT
SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA
VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA
KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE
DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ
PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVA
TQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGATPGLTTVEIVTMSHQALGDVAGRGN
EKKPSSVRALSIVLPIVLLVFLCLGVFLLWKNWRLKNINSINFDNPVYQKTTEDEVHICH
NQDGYSYPSRQMVSLEDDVA
Download sequence
Identical sequences A0A024R7D5 P01130
9606.ENSP00000252444 ENSP00000454071 NP_000518.1.87134 NP_000518.1.92137 ENSP00000454071 gi|4504975|ref|NP_000518.1|

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