SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|5031877|ref|NP_005564.1| from Homo sapiens

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|5031877|ref|NP_005564.1|
Domain Number 1 Region: 400-547
Classification Level Classification E-value
Superfamily Lamin A/C globular tail domain 6.41e-46
Family Lamin A/C globular tail domain 0.0000178
Further Details:      
 
Domain Number 2 Region: 320-387
Classification Level Classification E-value
Superfamily Intermediate filament protein, coiled coil region 3.14e-17
Family Intermediate filament protein, coiled coil region 0.0000724
Further Details:      
 
Domain Number 3 Region: 31-64
Classification Level Classification E-value
Superfamily Intermediate filament protein, coiled coil region 0.00000000942
Family Intermediate filament protein, coiled coil region 0.002
Further Details:      
 
Weak hits

Sequence:  gi|5031877|ref|NP_005564.1|
Domain Number - Region: 122-215
Classification Level Classification E-value
Superfamily Myosin rod fragments 0.000889
Family Myosin rod fragments 0.0074
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|5031877|ref|NP_005564.1|
Sequence length 586
Comment lamin-B1 isoform 1 [Homo sapiens]
Sequence
MATATPVPPRMGSRAGGPTTPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSAL
QLQVTEREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKCKAEHDQLLLN
YAKKESDLNGAQIKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLAAA
KKQLADETLLKVDLENRCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEYEY
KLAQALHEMREQHDAQVRLYKEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRI
ESLSSQLSNLQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDY
EQLLDVKLALDMEISAYRKLLEGEEERLKLSPSPSSRVTVSRASSSRSVRTTRGKRKRVD
VEESEASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSV
SYKYTSRYVLKAGQTVTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVA
QRSTVFKTTIPEEEEEEEEAAGVVVEEELFHQQGTPRASNRSCAIM
Download sequence
Identical sequences P20700
NP_005564.1.87134 NP_005564.1.92137 ENSP00000261366 HR5546 gi|5031877|ref|NP_005564.1| ENSP00000261366 9606.ENSP00000261366 ENSP00000261366

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]