SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|89357932|ref|NP_775487.2| from Homo sapiens

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|89357932|ref|NP_775487.2|
Domain Number 1 Region: 343-419
Classification Level Classification E-value
Superfamily Intermediate filament protein, coiled coil region 1.12e-20
Family Intermediate filament protein, coiled coil region 0.00077
Further Details:      
 
Domain Number 2 Region: 110-144
Classification Level Classification E-value
Superfamily Intermediate filament protein, coiled coil region 0.0000000000942
Family Intermediate filament protein, coiled coil region 0.0015
Further Details:      
 
Domain Number 3 Region: 149-224
Classification Level Classification E-value
Superfamily Intermediate filament protein, coiled coil region 0.00000366
Family Intermediate filament protein, coiled coil region 0.0086
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|89357932|ref|NP_775487.2|
Sequence length 520
Comment keratin, type II cytoskeletal 78 [Homo sapiens]
Sequence
MSLSPCRAQRGFSARSACSARSRGRSRGGFSSRGGFSSRSLNSFGGCLEGSRGSTWGSGG
RLGVRFGEWSGGPGLSLCPPGGIQEVTINQNLLTPLKIEIDPQFQVVRTQETQEIRTLNN
QFASFIDKVRFLEQQNKVLETKWHLLQQQGLSGSQQGLEPVFEACLDQLRKQLEQLQGER
GALDAELKACRDQEEEYKSKYEEEAHRRATLENDFVVLKKDVDGVFLSKMELEGKLEALR
EYLYFLKHLNEEELGQLQTQASDTSVVLSMDNNRYLDFSSIITEVRARYEEIARSSKAEA
EALYQTKYQELQVSAQLHGDRMQETKVQISQLHQEIQRLQSQTENLKKQNASLQAAITDA
EQRGELALKDAQAKVDELEAALRMAKQNLARLLCEYQELTSTKLSLDVEIATYRRLLEGE
ECRMSGECTSQVTISSVGGSAVMSGGVGGGLGSTCGLGSGKGSPGSCCTSIVTGGSNIIL
GSGKDPVLDSCSVSGSSAGSSCHTILKKTVESSLKTSITY
Download sequence
Identical sequences Q8N1N4
gi|89357932|ref|NP_775487.2| 9606.ENSP00000306261 ENSP00000306261 NP_775487.2.87134 NP_775487.2.92137 ENSP00000306261 ENSP00000306261

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]