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  Home > Genomes > Microcoleus sp. PCC 7113 > gi|428311443|ref|YP_007122420.1|

Domain assignment for gi|428311443|ref|YP_007122420.1| from Microcoleus sp. PCC 7113

Domain architecture

Domain assignment details

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Strong hits

Sequence:  gi|428311443|ref|YP_007122420.1|
Domain Number 1 Region: 1535-1702
Classification Level Classification E-value
Superfamily ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1.2e-46
Family Histidine kinase 0.0012
Further Details:      
 
Domain Number 2 Region: 1723-1844
Classification Level Classification E-value
Superfamily CheY-like 6.55e-33
Family CheY-related 0.0072
Further Details:      
 
Domain Number 3 Region: 934-1061
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 4.71e-31
Family Flavin-binding PAS domain 0.02
Further Details:      
 
Domain Number 4 Region: 1326-1451
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 1.03e-29
Family Hypoxia-inducible factor Hif2a, C-terminal domain 0.035
Further Details:      
 
Domain Number 5 Region: 674-801
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 1.29e-29
Family Flavin-binding PAS domain 0.04
Further Details:      
 
Domain Number 6 Region: 413-537
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 3.66e-26
Family Hypoxia-inducible factor Hif2a, C-terminal domain 0.058
Further Details:      
 
Domain Number 7 Region: 1060-1188
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 4.71e-25
Family Flavin-binding PAS domain 0.076
Further Details:      
 
Domain Number 8 Region: 1464-1546
Classification Level Classification E-value
Superfamily Homodimeric domain of signal transducing histidine kinase 9.42e-18
Family Homodimeric domain of signal transducing histidine kinase 0.0019
Further Details:      
 
Domain Number 9 Region: 1187-1318
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 3.14e-17
Family Heme-binding PAS domain 0.081
Further Details:      
 
Domain Number 10 Region: 5-146
Classification Level Classification E-value
Superfamily CheY-like 0.0000000000000027
Family CheY-related 0.0023
Further Details:      
 
Domain Number 11 Region: 551-662
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 0.00000000000332
Family BphP N-terminal domain-like 0.084
Further Details:      
 
Domain Number 12 Region: 810-935
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 0.0000000000279
Family Heme-binding PAS domain 0.031
Further Details:      
 
Domain Number 13 Region: 282-415
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 0.000000000171
Family Flavin-binding PAS domain 0.049
Further Details:      
 
Domain Number 14 Region: 167-267
Classification Level Classification E-value
Superfamily PYP-like sensor domain (PAS domain) 0.0000114
Family Heme-binding PAS domain 0.081
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|428311443|ref|YP_007122420.1|
Sequence length 1857
Comment PAS domain-containing protein [Microcoleus sp. PCC 7113]
Sequence 
MLTHRTVLVIADSAESDRVYEHQLQQDSNVAYKILTEQYDTPILALSQSQQIDGILLELH
FPHSNSIQLLRQLKEQMGDRCPPIVVIDSDDAEVAVRAFKNGAADYLVKDRMTPDDLRLS
MHSAIENAELRRELERSQEQFQTSVENMLDCFGIFSAMRDESGQIVDFRIDYLNGAACEN
NRMPKAMQIGRGLCEVLPAHRESGLFDEYCRLVETAEPLIEDSLIYDDTYGKQHLVRAFD
IRATKLNDGFVASWRDVTDRKRLELELSHTVTDLQRHEAAIQQLNRDLTNRVAELQSLLD
IIPVGIAIATDPSCTQMQNNAYLRQLLGVDPGSNISKSAPVDEQPPYRVFQDGREVPAED
LPMQVAVRLGIDVRDAEFDILLPNGTVHQLLSYATPLRDDQNQIRGVIGAFLDITERNQD
AAALKASQQRYRELAEAMPQMVWTADATGAVNYCNQRWYEYTGLNEAESMGLAAANTVHP
DERDRSLTQWSEAIANGQSFEVEYRLCHWGGEYQWFICRAIPTRDSQNQLTGWIGTITNI
DDIKRSEALVQQSEQQLQRQLAEIEAIYQSAPIGLNVLDTELRFVRINQRLADINGLPIE
AHLGRTVRELFPNLADTLEQLLHPILKTGEPLLNVEIQGEIPAQPGIKRTWLEHFLPLKA
GERVVGISTVCEEITERIEVEAALRQSEERFRHMADNAPVMIWVTDATGYCTYLNQGWYD
FTGQTEATGLGFGWLDAVHPEDSESSKNVFLSATHRQEAFRLEYRLRRKDGKYRSCLDAA
SPWLGEDGEFKGYIGSVIDISDVYDELRLRKQAEEALRVSEERYRTLFENMNEGFCVAEV
LFDEHNKPIDYRLLEINSVFEKHSGLKNAQGKTARELHPELEQYWIDLYGNVVLTGEPVR
YENYSEALNRWFDVSSFRIGPPGSRKVAILFEDISKRKQTERELQESEMRFRTLADNISQ
FAWMADENGQIFWYSKRWFDYTGTTLEEMEGWGWQKVHHPNHVDRVVEKISRCFETGETW
EDTFPLRGKDGQYRWFLSRAIPVRDEQGKVLRWFGTNTDITERKQTEAALQASEERYRSL
IEATAQIIWNEQGDRGEFTTPQPAWSAFTGQTYDELKGWGWLNAVHPDDRAMTTQAWLIA
LENRALYEVEHRVRRHDGVYRHMSVRAVPVFEENGSIREWIGVHTDVTDRKQAEAALHQS
EDRLRMAIESAQLGTWDWNLITNKLTWDTGCKAMFGLPPDAESSIEVFFEGLHPDDRERL
EQVMQWSFNPASGGNCDTEYRTIGIQDGIERWIAAKGQAYFNAAGNPIRFIGTVMDITET
KRREAERKQAEEARRESEIRFGTLASHAPVGIFMTDPQGNCLYVNERWCEMAGMSLEAAQ
ATGWVSALHPDDRERVADLWYQAAQNKQVFAAEYRFQTPQGKVTWIQGSATALQRGTGEV
TGYLGTLTDITERKQVEAEREQLFQQEQAAREAAERANRIKDEFLAVLSHELRSPLNPIL
GWTKLLQMRKFDETKTAEALATIERNAKVQTQLIDDLLDVAKILRGKLSLNVNSVNLSSA
IAAAIDTVRTAAVAKSISLHPVLPNIGQVSGDAARLQQIVWNLLSNAIKFTPKGGRVDIQ
LNRVGNQAEIAVRDTGRGINPDFLPHIFESFRQEDASITRQYGGLGLGLAIVRQLVEAHG
GTITADSPGEGLGAAFTVRLPLLDVAPEIQQTDELPQDKLDITGIRVLAVDDDPDARELL
TVLLTQYGADVLTVASAVEVLEHLPSFQPDVLVSDIGMPEVDGYTLIQQVRALPSKGGQI
PAIALTAYAREDDRDRAITSGFQRHVTKPLEPEQLVQAVLALTRSELNHSLNQNYSV
Download sequence
Identical sequences K9WGV9
WP_015183158.1.75295 gi|428311443|ref|YP_007122420.1|

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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