SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Pavirv00068425m|PACid:23791885 from Panicum virgatum v202

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Pavirv00068425m|PACid:23791885
Domain Number 1 Region: 183-462
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 3.3e-61
Family Tandem AAA-ATPase domain 0.00017
Further Details:      
 
Domain Number 2 Region: 544-625
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 3.33e-22
Family GUCT domain 0.023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Pavirv00068425m|PACid:23791885
Sequence length 657
Sequence
MAVDDSASRKAKRKQLKAAAAAAAAAAAAAEAEAASAKKEKKRKAKEPSPSSDEEEKSST
SSEETAPAPKKAKEKAKKAVEASPPASEDDGVVTASSDEDPADPNALTNFRISEPLRQRL
KSKGINALFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLVNGTHKATRKTDY
GRPPSVLVLLPTRELANQVHADFEFYGATYGLSACCVYGGSPYRPQEMALRKGVDIIVGT
PGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKVQTLLFSATL
PDWVNKLSMRFLKGNRKTVDLVGNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGG
RTIIFTETKDSASELSGLIPGSRALHGDVVQAQREVILAGFRGGKFQVLVATNVAARGLD
INDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRYKHSVSRLERESGVKFEH
ISAPQPTDVAQSAGTEAADAIASVSDSVIPIFREQAEQLLSSSSLSAADLLAKALAKAVG
YTDIKKRSLLSSMEDYTTLHLQTGRPMWSPGFAFTILKRFMPEEKLADVKGATLTADGTG
VVFDVPAADVEDYIQASESAAQVTLDEVKQLPPLQEREQSRGFSGRGGGGNRFNRRN
Download sequence
Identical sequences Pavirv00068425m|PACid:23791885

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]