SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|374312646|ref|YP_005059076.1| from Granulicella mallensis MP5ACTX8

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|374312646|ref|YP_005059076.1|
Domain Number 1 Region: 114-170
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 0.000000000000243
Family Sigma4 domain 0.0036
Further Details:      
 
Domain Number 2 Region: 12-73
Classification Level Classification E-value
Superfamily Sigma2 domain of RNA polymerase sigma factors 0.0000000706
Family Sigma2 domain of RNA polymerase sigma factors 0.0014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|374312646|ref|YP_005059076.1|
Sequence length 172
Comment ECF subfamily RNA polymerase sigma-24 subunit [Granulicella mallensis MP5ACTX8]
Sequence
MQTKYNTTSDSETHCIECVDAMYRYALFLTCNPEDAEGLVQETYARALQLIGNPWGGGNA
KKGLFAILRDIWLHDVGRSHPKSDESPVRRRGPHSAVGYPGGLHHASASGIEDEQVRIAV
RSLPVPYCEVILLREFEDLSYHSIATVLGCPVGTVVARLSQARTALRELLAA
Download sequence
Identical sequences G8P0F8
gi|374312646|ref|YP_005059076.1| WP_014266919.1.98070

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]