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Domain assignment for gi|374313613|ref|YP_005060043.1| from Granulicella mallensis MP5ACTX8

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|374313613|ref|YP_005060043.1|
Domain Number 1 Region: 117-402
Classification Level Classification E-value
Superfamily Sigma2 domain of RNA polymerase sigma factors 9.81e-66
Family Sigma2 domain of RNA polymerase sigma factors 0.00000698
Further Details:      
 
Domain Number 2 Region: 465-566
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 1.4e-26
Family Sigma4 domain 0.00023
Further Details:      
 
Domain Number 3 Region: 408-481
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 4.8e-21
Family Sigma3 domain 0.0012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|374313613|ref|YP_005060043.1|
Sequence length 573
Comment RpoD subfamily RNA polymerase sigma-70 subunit [Granulicella mallensis MP5ACTX8]
Sequence
MADELDKYEEDVDRIIDTGKEKGYLTYGEVNDLLPGDITSPDELDDLMTTINTQGIEVLS
GEGRRAASERAAEDSDNESGEEGDDVELDLSPGTLEKTNDPVRMYLREMGTVPLLTREGE
VEIAKRIERGQLRVMKAISRSPIVIREITGLGEDLKRGVRNIKEVVVFDEEELTEEILAA
RVKQTVARIDELIKHQKKAADFGARVAEPHGKDAKAKEKDKRKSRWLMGREHVFVNRIVR
ELKYTNGEKKRLLDKVNKTVDSMRTLERQIRSLEAKFEASRSEELKKEYKRQQKNCRVDL
QRVEADSGISLDDLKRTQREMIQGDMDAEKAKRELIEANLRLVVSIAKKYTNRGLQFLDL
IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLI
RTSRQLVQELGREASSEEIAKRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIE
DRMAVSPSDAVISVNLKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTR
ERIRQIEAKALRKLRHPSRSRKLKAFVDGVKEL
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Identical sequences G8NXL8
gi|374313613|ref|YP_005060043.1| WP_014267884.1.98070

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