SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for PYU1_T005820 from Pythium ultimum v1.7-2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  PYU1_T005820
Domain Number 1 Region: 291-394
Classification Level Classification E-value
Superfamily Tudor/PWWP/MBT 1.38e-16
Family PWWP domain 0.0027
Further Details:      
 
Weak hits

Sequence:  PYU1_T005820
Domain Number - Region: 590-674
Classification Level Classification E-value
Superfamily Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.00209
Family Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) PYU1_T005820
Sequence length 709
Comment protein Name="PYU1_T005820" Note="Similar to Nefh: Neurofilament heavy polypeptide (Mus musculus)" AED:0.526294624689646 QI:0|0.2|0.16|0.66|1|1|6|0|709
Sequence
MSSTGGENVEHAAVPEAKTLPPNDAPDRATAKDGSNDATRDENAPVKAEKSTGEDDVSKK
ADAETNVTDAVKGTAVSKEASDGAKDDMQVKKDDPVAAGAENAEAEKDATDEKPPAKKRG
RKPKKDKEAKAENGEATKRAKLTPASLASPATPVKPKRGRPSKKVLEERAAAAAAAAAAA
AAGKDGDEARQGDANDEEAAADKPKKRKSSVGRKPKKDKEQEAGSEGEETESEPEKQPKK
RAKLSTAKPAKEKKTPGRKKKPAKVEEEESDSDDDTQREVVKRVEALDPEVKAKFGQIVW
AKMTGYPYWPALITDPRYLPPKFQVTAMKDLETKYLVYFYNAKNFAATLFKNVEPWDDTK
NNYREGYPVKDSKAPKRRAKLMEAIAEADPIVKEPKPKKEVKSAGEPGTPEKRRGRPPGS
KNVNKTAKQPTARKSKQKAEAAADSTEKNEPEEDTEEPTQDSQEAEEEEEDPVAKSLSKE
EIKAKIASKKTPSKKKVATDDGDLKSKSAGAAKKASGAPGKTVKPASSAEDIDSKRKKEI
ELVVPRKSVKSADIREMTEEAAKKKIGGPKEKSKKDKGDYKVGDLGSFASKLTRLHANES
SKNNDELIQMLNHLFSEKIVYRSDVERSGLAAIIAVLRKSSNPTVAQTASALRKHLMKII
NHDTGADTQKSASKSTDSKKTVKDEKKNDLGDAKKESAKPVKELTQTLK
Download sequence
Identical sequences K3WLH8
PYU1_T005820

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]