SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSSSCP00000029457 from Sus scrofa 69_10.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSSSCP00000029457
Domain Number 1 Region: 23-202
Classification Level Classification E-value
Superfamily MHC antigen-recognition domain 3.58e-77
Family MHC antigen-recognition domain 0.000000107
Further Details:      
 
Domain Number 2 Region: 205-297
Classification Level Classification E-value
Superfamily Immunoglobulin 6.68e-30
Family C1 set domains (antibody constant domain-like) 0.000023
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000029457   Gene: ENSSSCG00000001231   Transcript: ENSSSCT00000036412
Sequence length 361
Comment pep:novel chromosome:Sscrofa10.2:7:24748105:24751627:-1 gene:ENSSSCG00000001231 transcript:ENSSSCT00000036412 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGPGALFLLLSGTLALTGTQAGPHSLSYFFTAVSRPDRGDSRFIAVGYVDDTQFVRFDSD
APNPRMEPRAPWIQQEGQEYWDEETRNAMDNAQINRVNLKTLRGYYNQSEAGSHTLQRMF
GCYLGPDGLLLRGYDQDAYDGADYLALNEDLRSWTAADMAAQISKRKQEEADVAERMRSY
LQGTCVESLRKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFHPKEISLTWQR
EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQP
PVPIVGIIVGLVLVLVAGAVVAGVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPR
V
Download sequence
Identical sequences A0A0A7BZR3
ENSSSCP00000001303 ENSSSCP00000029457 XP_013833010.1.46622 XP_020954096.1.46622

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]