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Domain assignment for ENSSSCP00000021008 from Sus scrofa 69_10.2

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000021008
Domain Number 1 Region: 203-332
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 7.06e-55
Family Retrovirus capsid protein, N-terminal core domain 0.00000283
Further Details:      
 
Domain Number 2 Region: 1-103
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 3.35e-43
Family MMLV matrix protein-like 0.00000675
Further Details:      
 
Domain Number 3 Region: 473-516
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000000598
Family Retrovirus zinc finger-like domains 0.00083
Further Details:      
 
Weak hits

Sequence:  ENSSSCP00000021008
Domain Number - Region: 342-372
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 0.00366
Family Retrovirus capsid protein C-terminal domain 0.0097
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000021008   Gene: ENSSSCG00000024066   Transcript: ENSSSCT00000025714
Sequence length 524
Comment pep:known chromosome:Sscrofa10.2:1:42557090:42558664:1 gene:ENSSSCG00000024066 transcript:ENSSSCT00000025714 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGQTVTTPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTFDVGWPSEGTFNSEI
ILAVKAIIFQTGPGSHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKH
SAEKVEPSPRIYPEIEEPPTWPEPQPVPPPPYPAQGAVRGPSAPPGAPVVEGPAAGTRSR
RGATPERTDEIAILPLRTYGPPMPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTG
LVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPL
TRPGWDYNTAEGRESLKIYRQALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLME
AFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEGLQEAELRDLVREAEKVYYRR
ETEEEKEQRKEKEREEREERRDRRQEKNLTKILAAVVEGKSSRERERDFRKIRSGPRQSG
NLGNRTPLDKDQCAYCKEKGHWARNCPKKGNKGPKVLALEEDKD
Download sequence
Identical sequences ENSSSCP00000021008 ENSSSCP00000026419 ENSSSCP00000021008 ENSSSCP00000026419

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