SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSSSCP00000000122 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSSSCP00000000122
Domain Number 1 Region: 5-107
Classification Level Classification E-value
Superfamily Calponin-homology domain, CH-domain 1.09e-33
Family Calponin-homology domain, CH-domain 0.000064
Further Details:      
 
Domain Number 2 Region: 190-219
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.000000107
Family LIM domain 0.0064
Further Details:      
 
Domain Number 3 Region: 159-189
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.00000259
Family LIM domain 0.02
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000000122   Gene: ENSSSCG00000000118   Transcript: ENSSSCT00000000124
Sequence length 864
Comment pep:known_by_projection chromosome:Sscrofa10.2:5:7393701:7423243:-1 gene:ENSSSCG00000000118 transcript:ENSSSCT00000000124 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MAGPRGALLAWCRRQCEGYRGVDIRDLSSSFRDGLAFCAILHRHRPDLLDFDSLSKDNVF
ENNRLAFEVAEKELGIPALLDPSDMVSMRVPDCLSIMTYVSQYYNHFASPGQAGVSPPRK
GLAPSSPASEAAASVEPGDRAQDEERSSGSLAEQGAHRAPSSICAACQQHVHLVQRYLAD
GKLYHRHCFRCHRCSSTLLPGSYQDGPEEGTFVCAEHCARLGPGGRSGARPGPPPQPKQQ
QLAGEAKDVEAVGPSPNAAAGAAEAEADMPKASPEARPQIPTKPRVPGKPQELASPPASR
PTPAPRRASESTAPTPPTPRPRSSLQHENLAEPGGSSVLVNDLGKLHEPPVPKPRGTPKL
SERTPPPRKDPPWITLVQAEPKKKPAPLPPSSSPGPPPPPQPQGQDSRQVENGGVAEVAP
QGLEVATLESKPYNPFEDEEEEPPAATGSALAHPESTAKSLHPWYGITPTSSPKTKKRPA
PRAPSASPLALHASRLSHSEPPSATPSPALSVESLASESSSQPPSTELLEPPVVPKSCSE
PAVHAPGTPGTSASLSANSSLSSSGELAQPSVDRTPQASPGLAPSARGSPGPPPAKPCSG
AAPTPLLLVEDKSPAPSPGTSSPQLQVKSSCKENPFNRKPSPTASPTIKKATKGSKPARP
PAPGHGFPLIKRKVQADQYIPEEDIHGEVDTIERQLDALEHRGVLLEEKLRGGANEGRED
DMLVDWFRLIHEKHLLVRRESELIYVFKQQNLEQRQADVEYELRCLLNKPEKDWTEEDRG
REKVLMQELVTLIEQRNAIVNCLDEDRQREEEEDKMLEAMIKRKEFQKEAESEGKKKGKF
KTMKVLKLLGNKRDPKSKSSADKS
Download sequence
Identical sequences ENSSSCP00000000122 ENSSSCP00000000122

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]