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  Home > Genomes > Sus scrofa 76_10.2 > ENSSSCP00000000845

Domain assignment for ENSSSCP00000000845 from Sus scrofa 76_10.2

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000000845
Domain Number 1 Region: 259-364
Classification Level Classification E-value
Superfamily Metalloproteases ("zincins"), catalytic domain 7.94e-22
Family Reprolysin-like 0.0086
Further Details:      
 
Domain Number 2 Region: 1085-1144
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000288
Family TSP-1 type 1 repeat 0.0043
Further Details:      
 
Domain Number 3 Region: 899-958
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000051
Family TSP-1 type 1 repeat 0.005
Further Details:      
 
Domain Number 4 Region: 957-1015
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000589
Family TSP-1 type 1 repeat 0.0043
Further Details:      
 
Domain Number 5 Region: 1239-1296
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000902
Family TSP-1 type 1 repeat 0.0044
Further Details:      
 
Domain Number 6 Region: 1300-1355
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000275
Family TSP-1 type 1 repeat 0.0026
Further Details:      
 
Domain Number 7 Region: 1185-1240
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000445
Family TSP-1 type 1 repeat 0.0034
Further Details:      
 
Domain Number 8 Region: 1035-1086
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000068
Family TSP-1 type 1 repeat 0.0064
Further Details:      
 
Domain Number 9 Region: 1536-1591
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000405
Family TSP-1 type 1 repeat 0.0047
Further Details:      
 
Domain Number 10 Region: 840-903
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000876
Family TSP-1 type 1 repeat 0.0026
Further Details:      
 
Domain Number 11 Region: 1406-1469
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000085
Family TSP-1 type 1 repeat 0.0084
Further Details:      
 
Domain Number 12 Region: 1352-1411
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000275
Family TSP-1 type 1 repeat 0.0044
Further Details:      
 
Weak hits

Sequence:  ENSSSCP00000000845
Domain Number - Region: 786-842
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00785
Family TSP-1 type 1 repeat 0.01
Further Details:      
 
Domain Number - Region: 1470-1518
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.034
Family TSP-1 type 1 repeat 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000000845   Gene: ENSSSCG00000000795   Transcript: ENSSSCT00000000862
Sequence length 1793
Comment pep:known_by_projection chromosome:Sscrofa10.2:5:77324374:77484603:-1 gene:ENSSSCG00000000795 transcript:ENSSSCT00000000862 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MRVAKWLTGLLYQLSLFITRSWEVHLHPRQEALVRTLASYEVVTPARVNEFGEVFPQSHH
FSRRKRSSEAPEPTPFRTHYRIRAYGQLFQLNLSADAAFLAAGYTEVHLGAPARQAEDRS
AVPPDLRHCFYRGQVNAREDNTAVFSICGGLMGTFKAHDGEYFLEPIMKADGSEHDEDHN
KPHLIYRQEVKRNYFLPSHKPCEVSESQIKKTTLPFHNYSNVSEDLNIKEEIVLGYSSKN
VSLEHERSQIHSRKKRFLSYPRYVEVMVTADAKMVHHHGQNLQHYVLTLMSIVAAIYKDS
SIGNLINIVIVKIIIHDEQEGPVVSFNAATTLRNFCLWQQTQNVLDDAHPSHHDTAVLIT
RYGLEITLPTEIVTLSLLHDHQYFLYAEAFYGNFRPEHWADPLEINIVMELRTHFVPLLD
LSVARKIKNYLLLVLMLHACLNYWVLLLGFFSDLFIYMKISCRYFWVGWLAKGKKKFCLR
VRLRAILAFQSLEMKTFSPLFSYQSMVLTCVYKETMKQETRECPIEWLGTKYCKSEKFTF
LFYLSDKYLNIDLTVIHQAGIGGGIELIVRNTCFTLMKCEILVQVINACNWESEPTVNSS
SQIKLGIIESFVKGYLPSLISRRDVKNISVLLVVFSISQVLYPFAALSDTQGNFLLNGNF
VVSMSKKEINIQGAIFEYSGSNNSIERINSTDRLEEELVLQVLCVGNLYNPDVRYSFSIP
TEEKSDLFTWDPYGPWQDCTKMCQGTCRDKHICSRLADSKELPKPHCSHKPAPLLCIWKC
NHIIFGRWHITGKSECSSLCGQGYKSLDIHCMKYSIHKGQTVPVDDRYCGDQLKPPTREP
CHGDCVLTRWHYSEWSQQCSRSCGGGEKSRESYCMNNFGHRLADRECQGLPRVTIENCNE
FSCPRWATSEWSECLVTCGKGTKQRQVWCQLNEDHLSDGFCDPSTKPESLRPCELHTCAS
WQVGPWGSCTATCGQGYQMRAGKCVNELLSAVLDDRLCHGASRPGDRQDCIVTPCSVIPK
VGATSLPAVPMGKIAQWRYGSWTPCSVSCGRGSQARYVSCRDAHDEIADESYCAHIPRPA
DISLCFSPCGEWQTGNWSPCSASCGHGKTTRQVLCINYHQPINENYCDPEVRPLIEQECN
LAACPPTYDHFPSSSEQPSHFRGRNFPLTHKPEDNQNQGFHPSIRGNQWRTGPWGSCSSS
CAAGVQRRVVVCQDENGQSASYCDAASRPPELKHCDLGPCPRWSYGSWGECTQTCGGGIK
SRFVICQFPNGQISREQNCDLVNKPPSVVQCHMHACPDDVSWHRGPWKSCSASCGKGLKY
REVLCVDRFHGKLEEKYCSHLRKPRTHKACRSARCPSWKANRWKQCSVTCGSGLQQRDVY
CRLRGVGRVAEEKCDRSTRPYFQRQCWHQDCIQYQWVAGGWLDCSTSCKQRETRRQVRCV
DARNLQVNESFCDPLTRPLSIKRCGNPPCKYIVVTGDSSQCAGNCGFSYRQRITYCIGIQ
STEKYKVHQLWPVDYRECPVLPSPQVYKCNFRTCLHMATWKVGKWSKCSVTCGVGVMERR
VECMAENGWSSDLCLKHLKPDAQKKCYVNDCKTFTTCKEIQVKNSSAKDGDYYLNIKGKI
IKIYCAGMHLENPKEYISLVKGEEDNFSEVYGFRLQNPYECPFNGSRRQDCECKNDYLAA
GHTVFSKIRIDLISMQIKTTDFLFAQTVFGNAIPFATAGDCYSAARCPQGQFSINLAGTG
MKIASTAKWLAQGSYASVIIHRSQDGTKVFGRCGGFCGKCIPHMTTGLPIQVI
Download sequence
Identical sequences ENSSSCP00000000844 ENSSSCP00000000845

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.