SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSSSCP00000001818 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSSSCP00000001818
Domain Number 1 Region: 31-78
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.0000000000000238
Family LIM domain 0.0016
Further Details:      
 
Domain Number 2 Region: 147-194
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.0000000000000613
Family LIM domain 0.0016
Further Details:      
 
Domain Number 3 Region: 113-146
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.0000000000555
Family LIM domain 0.0079
Further Details:      
 
Domain Number 4 Region: 4-30
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.0000000146
Family LIM domain 0.0094
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000001818   Gene: ENSSSCG00000001672   Transcript: ENSSSCT00000001865
Sequence length 204
Comment pep:known_by_projection chromosome:Sscrofa10.2:7:43834679:43838041:-1 gene:ENSSSCG00000001672 transcript:ENSSSCT00000001865 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSWICPRCLQPVFFAEKVSSLGKNWHRFCLKCEHCHNVLSPGGHAEHNGRPYCHKPCYGV
LFGPRGVNIGGVGSYLYRSPAPIPASITPLSPSSFSSPRPRPGLPQGKKSKKTFTGETSL
CPGCEEPVYFAEKVMSLGRNWHRPCLRCQRCRKTLTAGSHAEHDGVPYCHIPCYGYLFGP
KGVNIGDVGCYIYDPVEIKSKPQP
Download sequence
Identical sequences ENSSSCP00000001818 ENSSSCP00000001818

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]