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  Home > Genomes > Sus scrofa 76_10.2 > ENSSSCP00000001960

Domain assignment for ENSSSCP00000001960 from Sus scrofa 76_10.2

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000001960
Domain Number 1 Region: 1070-1146
Classification Level Classification E-value
Superfamily Immunoglobulin 1.08e-16
Family I set domains 0.011
Further Details:      
 
Domain Number 2 Region: 683-757
Classification Level Classification E-value
Superfamily Immunoglobulin 0.00000000000103
Family I set domains 0.046
Further Details:      
 
Domain Number 3 Region: 466-519
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000000929
Family TSP-1 type 1 repeat 0.0032
Further Details:      
 
Domain Number 4 Region: 967-1045
Classification Level Classification E-value
Superfamily Immunoglobulin 0.000000000124
Family I set domains 0.036
Further Details:      
 
Domain Number 5 Region: 327-382
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000405
Family TSP-1 type 1 repeat 0.0036
Further Details:      
 
Domain Number 6 Region: 176-236
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000497
Family TSP-1 type 1 repeat 0.0019
Further Details:      
 
Domain Number 7 Region: 1186-1244
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000131
Family TSP-1 type 1 repeat 0.0049
Further Details:      
 
Domain Number 8 Region: 231-291
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000017
Family TSP-1 type 1 repeat 0.0043
Further Details:      
 
Domain Number 9 Region: 1248-1305
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000017
Family TSP-1 type 1 repeat 0.0046
Further Details:      
 
Domain Number 10 Region: 520-579
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000275
Family TSP-1 type 1 repeat 0.0029
Further Details:      
 
Domain Number 11 Region: 575-640
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000209
Family TSP-1 type 1 repeat 0.0037
Further Details:      
 
Domain Number 12 Region: 98-158
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000288
Family TSP-1 type 1 repeat 0.0056
Further Details:      
 
Domain Number 13 Region: 408-463
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000772
Family TSP-1 type 1 repeat 0.0086
Further Details:      
 
Domain Number 14 Region: 1364-1419
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000916
Family TSP-1 type 1 repeat 0.0059
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000001960   Gene: ENSSSCG00000001793   Transcript: ENSSSCT00000002009
Sequence length 1455
Comment pep:novel chromosome:Sscrofa10.2:7:56500840:56671956:-1 gene:ENSSSCG00000001793 transcript:ENSSSCT00000002009 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
EENVIAVPLGSRSVRITVKGPAHLFIESKTLQGSKGEHSFNSPGVFVVENTTVEFQRGSE
RQTFKIPGPLMADFIFKTRYTAAKDSVVQFFFYQPISHQWRQTDFFPCTVTCGGGYQLNS
AECVDIRLKRVVPDHYCHYYPENVKPKPKLKECSMDPCPSSDGFKEIMPYDHFQPLPRWE
HNPWTACSVSCGGGIQRRSFVCVEESMHGEILQVEEWKCMYAPKPKVMQTCNLFDCPKWI
AMEWSQCTVTCGRGLRYRVVLCINHRGQHVGGCNPQLKLHIKEECIIPIPCYKPKEKSPV
EAKLPWLKQAQELEETRIATEEPMFIPEPWSACSTTCGPGIQVREVKCRVLLTFTQTETE
LPEEECDGPPLPTERPCLLEPCDESPTSREPAATVSLQEKDSEMTYDWEYAGFTPCTATC
LGGRQEAIAVCLHIQTQQTVNDTLCDTVHRPPAMSQACNTEPCPPRWHTGSWGPCSATCG
VGIQTREVYCVHPGESPSPPEECREERPHALQACNQFDCPPSWHIEEWQQCSRTCGGGTQ
NRRVTCRQLLTDGSFLNLSDELCQGPKASSHKSCARTDCPPHVTMGDWSKCSVTCGVGTQ
RRKQVCQRLTAKGRRVPLSETMCRHLPGAPLVRSCQMPVCRKMKPEVKTKLGEQGPQILG
VQRVYIQTREEKRINLTVGSRAYLLPNTSVIIKCPVRRFQKSLIQWEKDGRCLQNSKRLG
ITKSGSLKIHSLTAPDIGTYQCIAGSAKETVVLKLIGTDNRLIAPPALRGHLMEYPGMDH
NEANNLGATWHKMRQMWSTKNELYLDDGQINNQPLLRALLGHCSNSAGNANSWEFKNKQF
EAAVKQGAYSMDTAQFDEMIRNMSQLIETGEVSDDLASQVIYHLVAELAKAQAPAHAPWR
GIPEEAPPAAHLRGETGSVPQSSNVKDSGKLTFKPKGPVLLRQSQPTSISFNKTVNARIG
DTVYITRRTEVINILCELDTPSEATYMWTKDGASLQPSAKVILDGMGKIQIQKPTKKDQG
VYGCSVANHLGSDVESSSVLYAEAPVILSIERNITRPEHSHLSVVIGGIVEAPLRANVTI
QCPVKGIPQPNITWLKKGGSLSDSISLLFNGSLLLQNVSLENEGTYVCTAINALGKAKAT
SVLHLLEQRQSDSKIIFPKGHKKHMLQASNTGANSQQETPYLQQTEPFWELGNWTHCSAT
CGHLGARVRRPQCVMANGQEVSESLCNHLQKPLAGYQPCNLQDCPSRWFTSTWSQCSVSC
GEGFRSRQVTCKRTRANGTVQVMSPRACALKDKPLGRRPCASHPCVQGAIEPGSQCPGRC
LGHAVRMQQPHVICQLHNSSDSDCDDRRRPSLKRNCSSEACDTCWYTGPWRPCTAACGRG
FQSRKVDCVHTRSCKPVAERRCVSRRKPTSWRHCLGPSCDRDCTDTTHYCTFVKHLHLCS
LDLYKQRCCQSCQEG
Download sequence
Identical sequences ENSSSCP00000001960 9823.ENSSSCP00000001960 ENSSSCP00000001960

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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