SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Sus scrofa 76_10.2 > ENSSSCP00000004370

Domain assignment for ENSSSCP00000004370 from Sus scrofa 76_10.2

Domain architecture

Domain assignment details

(show help)
Strong hits

Sequence:  ENSSSCP00000004370
Domain Number 1 Region: 322-466
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 3.01e-41
Family Mannose 6-phosphate receptor domain 0.000000247
Further Details:      
 
Domain Number 2 Region: 170-318
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 6.54e-41
Family Mannose 6-phosphate receptor domain 0.000000166
Further Details:      
 
Domain Number 3 Region: 626-761
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 2.75e-39
Family Mannose 6-phosphate receptor domain 0.00029
Further Details:      
 
Domain Number 4 Region: 1516-1647
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.7e-36
Family Mannose 6-phosphate receptor domain 0.000000265
Further Details:      
 
Domain Number 5 Region: 758-923
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 4.84e-34
Family Mannose 6-phosphate receptor domain 0.0015
Further Details:      
 
Domain Number 6 Region: 1370-1508
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 5.49e-34
Family Mannose 6-phosphate receptor domain 0.00042
Further Details:      
 
Domain Number 7 Region: 1223-1363
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.83e-33
Family Mannose 6-phosphate receptor domain 0.00011
Further Details:      
 
Domain Number 8 Region: 477-617
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 4.84e-32
Family Mannose 6-phosphate receptor domain 0.0017
Further Details:      
 
Domain Number 9 Region: 45-166
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.57e-31
Family Mannose 6-phosphate receptor domain 0.000000616
Further Details:      
 
Domain Number 10 Region: 1069-1219
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.14e-30
Family Mannose 6-phosphate receptor domain 0.001
Further Details:      
 
Domain Number 11 Region: 1651-1797
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 1.28e-30
Family Mannose 6-phosphate receptor domain 0.0011
Further Details:      
 
Domain Number 12 Region: 1987-2126
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 2.62e-29
Family Mannose 6-phosphate receptor domain 0.0022
Further Details:      
 
Domain Number 13 Region: 2133-2280
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 6.93e-28
Family Mannose 6-phosphate receptor domain 0.0013
Further Details:      
 
Domain Number 14 Region: 1804-1897,1946-1989
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 7.33e-22
Family Mannose 6-phosphate receptor domain 0.0025
Further Details:      
 
Domain Number 15 Region: 927-1078
Classification Level Classification E-value
Superfamily Mannose 6-phosphate receptor domain 3.27e-21
Family Mannose 6-phosphate receptor domain 0.0039
Further Details:      
 
Domain Number 16 Region: 1896-1945
Classification Level Classification E-value
Superfamily Kringle-like 5.42e-16
Family Fibronectin type II module 0.0013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000004370   Gene: ENSSSCG00000004044   Transcript: ENSSSCT00000004472
Sequence length 2488
Comment pep:known chromosome:Sscrofa10.2:1:9166935:9271240:-1 gene:ENSSSCG00000004044 transcript:ENSSSCT00000004472 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MGAAAGRSAHLGPAPAGYRLRSLLLVQLLLLVWAPRATGTQGTEFPELCSYTWEAVDTKN
NRLYKISICGNVAVAPCGTSSAVCMQDLKTNSFHSVGDSVLKSASRSLLEFNTTVSCGQQ
SANHRIQSSITFLCGKTLGTPEFVTATDCVHYFEWRTTAACKKDIFKAKKEVPCYVFDRE
LKKRDLNPLIKVGGAYLVDDSDPDASLFINVCRDIDTLRDRAPQLRACPLGTAACLVRGD
WAFDVGRPREGLQLLSNDRLVLSYVNEEPAPPDFCDGHSPAVTITFVCPSERREGTLPKL
TAKSNCRYEVEWVTEYACPRDYLESRNCFLSSEQHDITIDLQPLSRVGDAPYTCEGEEYV
FSLSVCGGAETPVCNEKDAAVCQVKKADSTQAKVAGRLQNQTLRYSDGDLTLIYFGGDEC
SSGFQRMSVINFECNKTAGNNGKGAPVFTGEVDCTYFFTWDTRYACVEEKEALLCGVADG
RQRFDLSALARHSELEQNWEAVDGSQRGAEKKHFFINICRRVLQEGQARGCPEDAAACAV
DESGSKNLGKFISSPTREKGNIQLSYSDGDECGGGKRINTNITLICKPGDLESAPVLRTS
RADGCFYEFEWYTAAACVLSRTEGDNCTVFDAQAGFSFDLSPLTKTNGAYKVETEKYEFY
INVCGAVSASACQPDSGACQVSKSDKKSWNLGRSNAKLSYYDGMIQLNYHDGTPYNNERR
TPRATLITFLCDRDAGVGLPEYQEEDNSTYNFRWYTSYACPEEPLECVVTDPSTLEQYDL
SSLAKSEGGRGGNWYALDSAGPHSTWRKYYINVCRPLNPVPGCDRYASACQMKYESHQGS
FSETVSISNLGVAKAGPVVENSGSLVLEYVNGSACTTSDGRRTTYTTRIHLVCSRGSLNT
HPIFSLSWECVVSFLWNTEAACPVRVTTDTDQACSIRDPNSGYVFDLNPLNRSQGYVLTG
IGKTFVFNVCGTMPICGTLDGKLASGCEAETETKELKNLRPGRLVGLEKILQLSPEGFIT
LTYTGLPSHPKGPADAFIIRFVCNGDLYPGVPKFLHRDIDSRLGIWNTFFDFETALACVP
SPVDCLVTDPEGNEYDLSGLSRVKKPWTAVDTTSDGKKRTFYLSVCNPLPYIPGCHGSMV
GSCLVSEDKSLNLGVVQVSPQVAANGSLSVVYVNGDTCKDQRYSTRVILECAHTAGSPTF
QLLDDCEYVFVWRTVEACPVVRVEGDNCSVKDPRHGNLYDLKPLALNDTVVSAGEYTYYF
RVCGKLSSDVCPTSDRSKVISSCQEKRGPQGFQKVAGLLTQKLTYENGVLKMNYTGGDTC
HKVYQRSTTIFFYCDRSTQAPVFLQETSDCSYLFEWRTQYACPPFDLTECSFKDAAGNTF
DLSSLARYSDNWEAVTRTGATEHYLINVCKSLAPQAGSEPCPPEAAVCLLGGAKPVNLGR
VRDGPQWKDGATLLKYVDGDPCPDRIRKKSTTIRFACRESQVSSRPMFISAVEDCEYTFS
WPTAAACPVKSNVHDNCQVTNPVTGHLFDLSSLSGRAGYTAAYSEKGLVYISVCGDNENC
APGVGACFGQTRISVGKANKRLTYEDQVLRLVYKNGSPCPSKTGLTYTSVISFVCRPEAG
PTDKPVLISLDKQTCTLFFSWHTPLACEQEVECTVRNGSSIIDLSPLIHRTGGYEAFDES
EDAASDTNPDFYINICQPLNPMHGVPCPAGAAVCKVPVDGAPIDIGRVTGPPILNPIANE
VYLNFESSTPCLADKHFNYTSLIAFHCKRGVSMGTPKLLRTSDCDFVFEWETPLVCPDEV
TTEGCSLTDEQLSYSFNLSSLSKSTFKVTRDSRTYSVGVCTAAAGLDQGGCKDGGVCLLS
GSRGASFGRLASMKLDYRHQDEAVILSYANGDNCPPETEEGDPCVFPFTLNGKSYEECVL
EGRARLWCATTADYDRDHEWGFCRHSNSHRTSAIIFKCDEDADVGRPQVFSEVRGCEVTF
EWKTKVVCPPKKMECKFVQKHRTYDLRLLSSLTGSWFFVHDGASYYLNLCQRIYKGPLDC
SDRASVCKKNPSGNVQVLGLVHTQKLDVIGDRVVVTYSKGHQCGGNKTASTVIELTCAKT
VGRPSFSRFDVDSCTYHVRWDSRAACAVKPQEVHMVNGTFTNPASGQSFSLGDIYFKRFS
ASGDMRANGDKYLYEIQLSSITSATHPACAGANICQVKPNDQHFSRKVGTSDKTKYYIQD
GDLDVVFASSSKCGKDKTKSVSSTIFFHCDPLVKDGSPEFSHETADGQYLFSWYTSAVCP
LEAGFGKNTGDDEPEHKGLSERSQAVGAILSLLLVALTGCLLTLLLYKKERREAVMSRLT
SCCRRGASVSYKYSKVNKEEEADENETEWLMEEIQLPTPRPGKEAQENGHITTKSVKAEA
LSSLRGDDQDSEDEVLTIPEVKVHPGRGPGDEGAHPMRPPQRQVLRERADDRVGLVLEEP
ARRGRPRAAHNKAVNSFHDDSDEDLLHI
Download sequence
Identical sequences ENSSSCP00000004370 ENSSSCP00000004370 9823.ENSSSCP00000004370

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.