SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSSSCP00000019422 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSSSCP00000019422
Domain Number 1 Region: 205-332
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 9.42e-55
Family Retrovirus capsid protein, N-terminal core domain 0.00000283
Further Details:      
 
Domain Number 2 Region: 1-103
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 1.18e-42
Family MMLV matrix protein-like 0.00000751
Further Details:      
 
Domain Number 3 Region: 473-513
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000000478
Family Retrovirus zinc finger-like domains 0.00074
Further Details:      
 
Weak hits

Sequence:  ENSSSCP00000019422
Domain Number - Region: 342-372
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 0.00366
Family Retrovirus capsid protein C-terminal domain 0.0097
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000019422   Gene: ENSSSCG00000022818   Transcript: ENSSSCT00000024448
Sequence length 524
Comment pep:known chromosome:Sscrofa10.2:12:28497771:28499345:1 gene:ENSSSCG00000022818 transcript:ENSSSCT00000024448 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGQTVTTPLSLTLDHWTEVKSRAHNLSVQVKKGPWQTFCVSEWPTFDVGWPSEGTFNSEI
ILAVKAIIFQTGPGSHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKH
SAEKVKPSPHIYPEIEEPPAWPEPQSVPPPPYPAQGAARGPSAPPGAPAVEGPAAGTRSR
RGATPERTDEIATLPLRTYGPPIPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTG
LVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPL
TRPGWDYNTAEGRESLKIYRQALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLME
AFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEGLQEAELRDLVKEAEKVYYKR
ETEEEREQRKEREREEREERRNKRQEKNLTKILAAVVEGKSNRERERDFRKIRSGPRQSG
NLGNRTPLDKDQCAYCKEKGHWARDCPKKGNKGLKVLALEEDKD
Download sequence
Identical sequences F8S319 Q6UJZ3
ENSSSCP00000019422 Q6UJZ3_9GAMR ENSSSCP00000019422

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]