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Domain assignment for ENSSSCP00000020056 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000020056
Domain Number 1 Region: 49-139
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 2.56e-35
Family SCAN domain 0.0000663
Further Details:      
 
Domain Number 2 Region: 432-489
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.11e-24
Family Classic zinc finger, C2H2 0.0055
Further Details:      
 
Domain Number 3 Region: 575-632
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 9.15e-24
Family Classic zinc finger, C2H2 0.0048
Further Details:      
 
Domain Number 4 Region: 488-548
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 7.72e-22
Family Classic zinc finger, C2H2 0.0075
Further Details:      
 
Domain Number 5 Region: 631-691
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.91e-20
Family Classic zinc finger, C2H2 0.006
Further Details:      
 
Domain Number 6 Region: 690-747
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.67e-20
Family Classic zinc finger, C2H2 0.006
Further Details:      
 
Domain Number 7 Region: 378-433
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.29e-19
Family Classic zinc finger, C2H2 0.0074
Further Details:      
 
Domain Number 8 Region: 338-390
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.09e-18
Family Classic zinc finger, C2H2 0.0049
Further Details:      
 
Domain Number 9 Region: 538-570
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000000114
Family Classic zinc finger, C2H2 0.011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000020056   Gene: ENSSSCG00000021069   Transcript: ENSSSCT00000026384
Sequence length 750
Comment pep:novel chromosome:Sscrofa10.2:7:23970367:23993147:1 gene:ENSSSCG00000021069 transcript:ENSSSCT00000026384 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSTKLREGAALTPVVYTREEQEGLRIVKVEEEEDHAWEQKPGQLENVYPYQELFRQCFRQ
FRYQEAPGPREALSRLQELCQKWLQPEIHSKEQILELLVLEQFLTILPEGLRAQVLGYHP
RSGEEVVTMLENLETELGDKGQQVQATAYYKQEVPWKEVGPVSLTDQSLTVQLKCDPWEH
IPLQENEKNHIPKSYFQIYTSKIFLCSRVQESSNFLGKIILYHWIKVGDSLYQQQSYSDY
LWASYLCCSITKNWLITCQKHIFKVLVPLKTLGKFSFLSCHSVFLVGGEARNMTGEFAPK
HISAEDNSLDAFQDPKCGETFQYRGKSEQQKVNPTRVKRHKCKECGKAFAQSSGLVRHWR
IHTGEKPYKCNQCGKAVSYKSALLSHQEIHNKIKRYQCNECGKAFSQNTGLVLHQRIHTG
KRPYGCKECGKSFSQSSHLIGHLRIHTGEKPFKCNECERAFTQRSGLMEHQRSHTGEKPY
TCKECGKAFRGSTSLTQHLRIHTGEKPYQCEECGRAFIQRSSLVRHQRVHRGQNKEKPYE
CSECGKTFRQRSNLTEHQRIHSKEKLYECKVCGKAFTQYAGLNQHRRIHTGEKPFECPVC
GRAFSRSSELIIHHRIHSGERPYECAECGKTFRVNSTLIIHQRSHTGEKPYKCDECGEAF
SQHSGLNKHKNHKRIHTGDKTYQCPECGKAFTRGEHLIEHRGIHSKEKPYQCKECGKAFS
QKTGLSHHLKIHTGMKPFECSECGRAFSCK
Download sequence
Identical sequences ENSSSCP00000020056 ENSSSCP00000020056

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