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  Home > Genomes > Sus scrofa 76_10.2 > ENSSSCP00000020623

Domain assignment for ENSSSCP00000020623 from Sus scrofa 76_10.2

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000020623
Domain Number 1 Region: 130-177
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000183
Family TSP-1 type 1 repeat 0.0013
Further Details:      
 
Domain Number 2 Region: 1219-1276
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000275
Family TSP-1 type 1 repeat 0.0012
Further Details:      
 
Domain Number 3 Region: 566-630
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000000183
Family TSP-1 type 1 repeat 0.0022
Further Details:      
 
Domain Number 4 Region: 967-1026
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000222
Family TSP-1 type 1 repeat 0.0023
Further Details:      
 
Domain Number 5 Region: 296-349
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000824
Family TSP-1 type 1 repeat 0.0034
Further Details:      
 
Domain Number 6 Region: 707-760
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000249
Family TSP-1 type 1 repeat 0.0046
Further Details:      
 
Domain Number 7 Region: 1350-1405
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000902
Family TSP-1 type 1 repeat 0.0031
Further Details:      
 
Domain Number 8 Region: 633-702
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000262
Family TSP-1 type 1 repeat 0.0076
Further Details:      
 
Domain Number 9 Region: 1097-1152
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000955
Family TSP-1 type 1 repeat 0.0058
Further Details:      
 
Domain Number 10 Region: 1271-1326
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000353
Family TSP-1 type 1 repeat 0.0074
Further Details:      
 
Domain Number 11 Region: 1025-1096
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000034
Family TSP-1 type 1 repeat 0.0035
Further Details:      
 
Domain Number 12 Region: 838-893
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000562
Family TSP-1 type 1 repeat 0.0075
Further Details:      
 
Weak hits

Sequence:  ENSSSCP00000020623
Domain Number - Region: 357-431
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000103
Family TSP-1 type 1 repeat 0.0069
Further Details:      
 
Domain Number - Region: 1154-1210
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000432
Family TSP-1 type 1 repeat 0.0046
Further Details:      
 
Domain Number - Region: 444-509
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00301
Family TSP-1 type 1 repeat 0.0072
Further Details:      
 
Domain Number - Region: 899-966
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0253
Family TSP-1 type 1 repeat 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000020623   Gene: ENSSSCG00000015350   Transcript: ENSSSCT00000024928
Sequence length 1593
Comment pep:known_by_projection chromosome:Sscrofa10.2:9:88921415:89309423:-1 gene:ENSSSCG00000015350 transcript:ENSSSCT00000024928 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
GPWGRCMGDECGPGGIQTRAVWCAHSEGWTTLHTNCKQAERPSNQQNCFKVCDWHKELYD
WRLGPWNQCQPVISKSLEKPLECIKGEEGIQVREITCIQKEKDVPAEDIICEYFEPKPLL
EACLIPCQQDCIVSEFSAWSECSKTCGSGLQHRTRQVVAPPQFGGSGCPNLTEFQVCQSS
PCEAAESLYSLQVGPWSTCSMPHSRQVRQARRRGKNKERDKDRGKGVKDPEARELIKKKR
NRNRQNRQENKYWDIQIGYQTREVMCTNKTGKTADLSFCKQEKLPMTFQACVIMKECQVS
EWSEWSPCSKTCHDMASPKGTRVRMRLIRQFPIGSEKECPELEEKEPCVSQGDGVAPCAT
YSWRTTEWTECRVDPLLSQQDKRRGNQTALCGGGIQTREVYCVQAKQNLPSQLNTPKDKE
ASKPVDVKSCTGPVPNTTQLCHIPCPTECEVSPWTAWGPCTYENCNDQQGKKGFKLRKRR
ITNEPTGGSGGTGNCPHLLEAIPCEEPSCYDWKAVRLGDCEPDNGKECGPGTQVQEVVCI
NSDGEEVDRQLCRDAIFPIPVACDAPCPKDCVLSMWSAWSSCSHTCSGKTTEGKQIRARS
ILAYAGEEGGAQCPNSSALQEVRSCNEHPCTVYHWQTGPWGQCIEDTSVSSFNTTTTWNG
EASCSVGMQTRKVICVRVNVGQVGPKKCPESLRPETVRPCLLPCRKDCIVTPYSDWTPCP
SSCKEGDSGIRKQTRHRVVIQLPANGGRDCTDPLYEEKACEAPQVCQSYRWKTHKWRRCQ
LVPWSVQQESPGAQEGCGPGRQARAITCRKQDGGQASIHECLQNAGPVPALTQACQIPCQ
DDCQFTSWSKFSSCNGDCGAVRTRKRTIVGKSKKKEKCKNSHLYPLIETQYCPCDKYNAQ
PVGNWSDCILPEGKVEVLLGMKVQGDIKECGQGYRYQAMACYDQNGRLVETSRCNSHGYI
EEACIIPCPSDCKLSEWSNWSRCSKSCGSGVKVRSKWLREKPYNGGRPCPKLDHVNQAQV
YEVVPCHSDCNQYIWVTEPWSVCKVTFVNMRDNCGEGVQTRKVRCMQNTADGPSDHVEDY
LCDPEEMPLGSRECKLPCPEDCVISEWGPWTRCTLPCNQNSFRQRSADPIRQPADEGRAC
PDAIEKEPCNLNKNCFHYYYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYC
EELGLEKNWQMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRP
CPALMEQSKPCPVKPCYQWQYGQWSPCKVQDAQCGEGTRTRNISCVVSDGSADDFSKVVD
DEFCTDTEPIIDGNKKMVLEESCTQPCPGDCYLKDWSSWSLCQLTCVNGEDLGFGGIQVR
SRAVIIQELENQYLCPEQMLETRPCDDGQCYEYKWMASAWKGSSRTVWCQRSDGVNVTGG
CLVVRQPDADRSCNPPCSQPHSYCSETRTCSCEEGYTEVMSSNGTLEQCTLIPVVVIPTV
EDKREDVKTSRAVHPTQPSSNPAGRGRTWFLQPFGPDGRLKTWVYGVAAGAFVLLIFIVS
MIYLACKKPKKPQRRQNNRLKPLTLAYDGDADM
Download sequence
Identical sequences ENSSSCP00000016278 ENSSSCP00000020623

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.