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  Home > Genomes > Sus scrofa 76_10.2 > ENSSSCP00000020719

Domain assignment for ENSSSCP00000020719 from Sus scrofa 76_10.2

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000020719
Domain Number 1 Region: 130-177
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000183
Family TSP-1 type 1 repeat 0.0013
Further Details:      
 
Domain Number 2 Region: 1206-1263
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000000275
Family TSP-1 type 1 repeat 0.0012
Further Details:      
 
Domain Number 3 Region: 553-617
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000000602
Family TSP-1 type 1 repeat 0.003
Further Details:      
 
Domain Number 4 Region: 954-1013
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000222
Family TSP-1 type 1 repeat 0.0023
Further Details:      
 
Domain Number 5 Region: 285-338
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000000811
Family TSP-1 type 1 repeat 0.0034
Further Details:      
 
Domain Number 6 Region: 694-747
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000249
Family TSP-1 type 1 repeat 0.0046
Further Details:      
 
Domain Number 7 Region: 1337-1392
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000000889
Family TSP-1 type 1 repeat 0.0031
Further Details:      
 
Domain Number 8 Region: 620-689
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000249
Family TSP-1 type 1 repeat 0.0076
Further Details:      
 
Domain Number 9 Region: 1084-1139
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000000889
Family TSP-1 type 1 repeat 0.0058
Further Details:      
 
Domain Number 10 Region: 1258-1313
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00000353
Family TSP-1 type 1 repeat 0.0074
Further Details:      
 
Domain Number 11 Region: 1012-1082
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000123
Family TSP-1 type 1 repeat 0.0035
Further Details:      
 
Domain Number 12 Region: 346-418
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000497
Family TSP-1 type 1 repeat 0.0069
Further Details:      
 
Domain Number 13 Region: 825-880
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0000602
Family TSP-1 type 1 repeat 0.0075
Further Details:      
 
Weak hits

Sequence:  ENSSSCP00000020719
Domain Number - Region: 1141-1197
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.000432
Family TSP-1 type 1 repeat 0.0046
Further Details:      
 
Domain Number - Region: 431-496
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.00301
Family TSP-1 type 1 repeat 0.0072
Further Details:      
 
Domain Number - Region: 886-953
Classification Level Classification E-value
Superfamily TSP-1 type 1 repeat 0.0201
Family TSP-1 type 1 repeat 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000020719   Gene: ENSSSCG00000015350   Transcript: ENSSSCT00000025355
Sequence length 1580
Comment pep:known_by_projection chromosome:Sscrofa10.2:9:88921415:89309423:-1 gene:ENSSSCG00000015350 transcript:ENSSSCT00000025355 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
GPWGRCMGDECGPGGIQTRAVWCAHSEGWTTLHTNCKQAERPSNQQNCFKVCDWHKELYD
WRLGPWNQCQPVISKSLEKPLECIKGEEGIQVREITCIQKEKDVPAEDIICEYFEPKPLL
EACLIPCQQDCIVSEFSAWSECSKTCGSGLQHRTRQVVAPPQFGGSGCPNLTEFQVCQSS
PCEAAESLYSLQVGPWSTCSMPHSRQVRQARRRGKNKDPEARELIKKKRNRNRQNRQENK
YWDIQIGYQTREVMCTNKTGKTADLSFCKQEKLPMTFQACVIMKECQVSEWSEWSPCSKT
CHDMASPKGTRVRMRLIRQFPIGSEKECPELEEKEPCVSQGDGVAPCATYSWRTTEWTEC
RVDPLLSQQDKRRGNQTALCGGGIQTREVYCVQDLSFPLAAAGMEKPASKPVDVKSCTGP
VPNTTQLCHIPCPTECEVSPWTAWGPCTYENCNDQQGKKGFKLRKRRITNEPTGGSGGTG
NCPHLLEAIPCEEPSCYDWKAVRLGDCEPDNGKECGPGTQVQEVVCINSDGEEVDRQLCR
DAIFPIPVACDAPCPKDCVLSMWSAWSSCSHTCSGKTTEGKQIRARSILAYAGEEGKPCC
PNSSALQEVRSCNEHPCTVYHWQTGPWGQCIEDTSVSSFNTTTTWNGEASCSVGMQTRKV
ICVRVNVGQVGPKKCPESLRPETVRPCLLPCRKDCIVTPYSDWTPCPSSCKEGDSGIRKQ
TRHRVVIQLPANGGRDCTDPLYEEKACEAPQVCQSYRWKTHKWRRCQLVPWSVQQESPGA
QEGCGPGRQARAITCRKQDGGQASIHECLQNAGPVPALTQACQIPCQDDCQFTSWSKFSS
CNGDCGAVRTRKRTIVGKSKKKEKCKNSHLYPLIETQYCPCDKYNAQPVGNWSDCILPEG
KVEVLLGMKVQGDIKECGQGYRYQAMACYDQNGRLVETSRCNSHGYIEEACIIPCPSDCK
LSEWSNWSRCSKSCGSGVKVRSKWLREKPYNGGRPCPKLDHVNQAQVYEVVPCHSDCNQY
IWVTEPWSVCKVTFVNMRDNCGEGVQTRKVRCMQNTADGPSDHVEDYLCDPEEMPLGSRE
CKLPCPEDCVISEWGPWTRCTLPCNQNSFRQRSADPIRQPADEGRACPDAIEKEPCNLNK
NCFHYYYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGKSVNLKYCEELGLEKNWQMNT
SCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPALMEQSKPCPV
KPCYQWQYGQWSPCKVQDAQCGEGTRTRNISCVVSDGSADDFSKVVDDEFCTDTEPIIDG
NKKMVLEESCTQPCPGDCYLKDWSSWSLCQLTCVNGEDLGFGGIQVRSRAVIIQELENQY
LCPEQMLETRPCDDGQCYEYKWMASAWKGSSRTVWCQRSDGVNVTGGCLVVRQPDADRSC
NPPCSQPHSYCSETRTCSCEEGYTEVMSSNGTLEQCTLIPVVVIPTVEDKREDVKTSRAV
HPTQPSSNPAGRGRTWFLQPFGPDGRLKTWVYGVAAGAFVLLIFIVSMIYLACKKPKKPQ
RRQNNRLKPLTLAYDGDADM
Download sequence
Identical sequences ENSSSCP00000020719

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.