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Domain assignment for ENSSSCP00000022871 from Sus scrofa 76_10.2

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Strong hits

Sequence:	ENSSSCP00000022871
Domain Number 1	Region: 203-332
Classification Level	Classification	E-value
Superfamily	Retrovirus capsid protein, N-terminal core domain	7.06e-55
Family	Retrovirus capsid protein, N-terminal core domain	0.00000283
Further Details:

Domain Number 2	Region: 1-103
Classification Level	Classification	E-value
Superfamily	Retroviral matrix proteins	1e-42
Family	MMLV matrix protein-like	0.00000739
Further Details:

Domain Number 3	Region: 473-516
Classification Level	Classification	E-value
Superfamily	Retrovirus zinc finger-like domains	0.00000000000598
Family	Retrovirus zinc finger-like domains	0.00083
Further Details:

Weak hits

Sequence:	ENSSSCP00000022871
Domain Number -	Region: 342-372
Classification Level	Classification	E-value
Superfamily	Retrovirus capsid dimerization domain-like	0.00366
Family	Retrovirus capsid protein C-terminal domain	0.0097
Further Details:

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by

Cellular Component	IC (bits)	H-Score

Biological Process	IC (bits)	H-Score

Molecular Function	IC (bits)	H-Score

External link(s)	Protein: ENSSSCP00000022871 Gene: ENSSSCG00000022115 Transcript: ENSSSCT00000023742
Sequence length	524
Comment	pep:novel chromosome:Sscrofa10.2:16:64433840:64435414:1 gene:ENSSSCG00000022115 transcript:ENSSSCT00000023742 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence	MGQTVTTPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTLDVGWPSEGTFNSEI ILAVKAIIFQTGPGSHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKH SAEKVEPSPRIYPEIEEPPTWPEPQPVPPPPYPAQGAVRGPSAPPGAPVVEGPAAGTRSR RGATPERTDEIAILPLRTYGPPMPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTG LVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPL TRPGWDYNTAEGRESLKIYRQALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLME AFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEGLQEAELRDLVREAEKVYYRR ETEEEKEQRKEKEREEREERRDRRQEKNLTKILAAVVEGKSSRERERDFRKIRSGPRQSG NLGNRTPLDKDQCAYCKEKGHWARNCPKKGNKGPKVLALEEDKD
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Identical sequences	Q8UMP6 ENSSSCP00000022871 Q8UMP6_9GAMR ENSSSCP00000022871

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