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Domain assignment for ENSSSCP00000023118 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000023118
Domain Number 1 Region: 44-137
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 7.32e-38
Family SCAN domain 0.0000442
Further Details:      
 
Domain Number 2 Region: 315-372
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.86e-27
Family Classic zinc finger, C2H2 0.003
Further Details:      
 
Domain Number 3 Region: 361-413
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 3.05e-20
Family Classic zinc finger, C2H2 0.0051
Further Details:      
 
Domain Number 4 Region: 277-329
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.14e-19
Family Classic zinc finger, C2H2 0.004
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000023118   Gene: ENSSSCG00000022999   Transcript: ENSSSCT00000024599
Sequence length 438
Comment pep:known_by_projection chromosome:Sscrofa10.2:12:53900476:53905605:1 gene:ENSSSCG00000022999 transcript:ENSSSCT00000024599 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
TAASLTAAKMLALQGTGDQEKIMMMETREEKQAWKRETGLRGNYSPSQEIFRQRFRQLCY
QEAPGPREALRRLRALCCEWLRPERHTKEQILEFLVLEQFLTILPEELQSRVRGHHPQSA
EEAVTVLEDLEKGHDEPGPQVPGPARGPAQQEPREEKAPLGAAQEKAGIQLQPRDTRPFP
ESEQVYLHFQSVIAEDDAEPEDKGSLPQPPIAEVEAQVLREKLTSSTSTFEGASEAEAPF
EEQQRNLRGERPRRPPARGKSFGQMVVTHKTPPPGKKDHECLECGKAFIYNSHLIIHQRI
HSGEKPYKCSDCGKTFNQSSNLIQHQRIHTGEKPYECRECGKAFRWSAHLVQHQRIHSGE
KPFECNECGKAFSQSSYLSQHLRIHSGEKPFLCRECGKAYRWSSELVRHQRVHAGKEPFA
GTQGRKPPDRTGLLSNQF
Download sequence
Identical sequences ENSSSCP00000023118 ENSSSCP00000023118

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