SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSSSCP00000028881 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSSSCP00000028881
Domain Number 1 Region: 67-133
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.0000000000000518
Family LIM domain 0.0013
Further Details:      
 
Domain Number 2 Region: 7-71
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.000000000000336
Family LIM domain 0.0027
Further Details:      
 
Domain Number 3 Region: 128-154
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.000024
Family LIM domain 0.0012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000028881   Gene: ENSSSCG00000012699   Transcript: ENSSSCT00000036653
Sequence length 154
Comment pep:novel chromosome:Sscrofa10.2:X:127250988:127286575:1 gene:ENSSSCG00000012699 transcript:ENSSSCT00000036653 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRY
WHDTCFRCSKCLHPLANETFMAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKGT
VWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCH
Download sequence
Identical sequences ENSSSCP00000028881

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]