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Domain assignment for ENSSSCP00000019106 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000019106
Domain Number 1 Region: 44-131
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 1.05e-35
Family SCAN domain 0.0000536
Further Details:      
 
Domain Number 2 Region: 656-712
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.11e-25
Family Classic zinc finger, C2H2 0.0039
Further Details:      
 
Domain Number 3 Region: 460-516
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.67e-25
Family Classic zinc finger, C2H2 0.0037
Further Details:      
 
Domain Number 4 Region: 599-656
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.05e-25
Family Classic zinc finger, C2H2 0.0045
Further Details:      
 
Domain Number 5 Region: 404-460
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.05e-25
Family Classic zinc finger, C2H2 0.0048
Further Details:      
 
Domain Number 6 Region: 543-600
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.26e-23
Family Classic zinc finger, C2H2 0.005
Further Details:      
 
Domain Number 7 Region: 701-753
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 5.95e-20
Family Classic zinc finger, C2H2 0.0052
Further Details:      
 
Domain Number 8 Region: 166-225
Classification Level Classification E-value
Superfamily KRAB domain (Kruppel-associated box) 7.32e-19
Family KRAB domain (Kruppel-associated box) 0.002
Further Details:      
 
Domain Number 9 Region: 347-404
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 4.65e-17
Family Classic zinc finger, C2H2 0.017
Further Details:      
 
Domain Number 10 Region: 506-538
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.0000000000239
Family Classic zinc finger, C2H2 0.0044
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000019106   Gene: ENSSSCG00000018031   Transcript: ENSSSCT00000019626
Sequence length 760
Comment pep:known_by_projection chromosome:Sscrofa10.2:12:62165538:62177698:1 gene:ENSSSCG00000018031 transcript:ENSSSCT00000019626 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MFSPGKRTASSSRAQVLLTWKPDKAQGGPRNAEKEILAARLLRDTETCRQNFRNFPYPDL
AGPRKALNQLRELCLKWLRPEIHSKEQILELLILEQFLTILPGEVRTWVKSQYPRSSEEV
VTLVEDLTQILEEEAASQNSALSQETPEEDSKGRQAFQAGWLNDLVTKESMTFKDVAVDI
TQEDWELMRPVQKELYKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEILEGPSPE
WETEAQEGPPAENISKLTKDETKPIKLEEPYDYENTMEGQATGTFRRIPTKRDFNLKSVL
SQEDDPTEEYFSKYSIYTSNFEKHPNLIIQFGTQSDDKTFVYDERAAFNHVSYGIVHRKI
YPGEKPYKCNVCGKKFRKYPSLIKHQSSHAKEKSYECEECGKEFRHVSSLIAHQRMHTGE
KPYECHQCGKAFSQRAHLTIHQRIHTGEKPYRCDDCGKDFSQRAHLTIHQRTHTGEKPYR
CLECGKTFSHSSSLINHQRVHTGEKPYICNECGKTFSQSTHLLQHQKIHTGKKPYKCNEC
WKVFSQSTYLIRHQRIHSGEKCYKCNECGKAFAHSSTLIQHQTTHTGEKSYICNICGKAF
SQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIHNGEKPFKCNICGKAYRQGA
NLTQHQRIHTGEKPYKCNECGKAFIYSSSLNQHQRTHTGERPYKCNECDKDFSQRTCLIQ
HQRIHTGEKPYACRVCGKTFTQSTNLIQHQRVHTGGRHRN
Download sequence
Identical sequences F1SDE5
ENSSSCP00000019106 XP_003132075.2.46622 ENSSSCP00000019106

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