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Domain assignment for ENSSSCP00000021237 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000021237
Domain Number 1 Region: 203-332
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 7.06e-55
Family Retrovirus capsid protein, N-terminal core domain 0.00000283
Further Details:      
 
Domain Number 2 Region: 1-103
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 2.59e-42
Family MMLV matrix protein-like 0.00000728
Further Details:      
 
Domain Number 3 Region: 473-516
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000000000329
Family Retrovirus zinc finger-like domains 0.00083
Further Details:      
 
Weak hits

Sequence:  ENSSSCP00000021237
Domain Number - Region: 342-372
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 0.00366
Family Retrovirus capsid protein C-terminal domain 0.0097
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000021237   Gene: ENSSSCG00000028224   Transcript: ENSSSCT00000030010
Sequence length 524
Comment pep:novel chromosome:Sscrofa10.2:8:15579229:15580803:1 gene:ENSSSCG00000028224 transcript:ENSSSCT00000030010 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGQTVTNPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTFDVGWPSEGTFNSEI
ILAVKAIIFQTGPGSHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKH
SAEKVEPSPRIYPEIEEPPTWPEPQPVPPPPYPAQGAVRGPSAPPGAPVVEGPAAGTRSR
RGATPERTDEIAILPLRTYGPPMPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTG
LVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPL
TRPGWDYNTAEGRESLKIYRQALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLME
AFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEGLQEAELRDLVREAEKVYYRR
ETEEEKEQRKEKEREEREERHDRRQEKNLTKILAAVVEGKSSRERERDFRKIRSGPRQSG
NLGNRTPLDKDQCAYCKEKGHWARNCPKKRNKGPKVLALEEDKD
Download sequence
Identical sequences ENSSSCP00000021237 ENSSSCP00000021237

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