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Domain assignment for ENSSSCP00000023630 from Sus scrofa 76_10.2

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSSSCP00000023630
Domain Number 1 Region: 190-306
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 1.02e-30
Family Retrovirus capsid protein, N-terminal core domain 0.00011
Further Details:      
 
Domain Number 2 Region: 9-90
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 1.82e-19
Family MMLV matrix protein-like 0.0011
Further Details:      
 
Weak hits

Sequence:  ENSSSCP00000023630
Domain Number - Region: 317-377
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 0.0201
Family Retrovirus capsid protein C-terminal domain 0.0088
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSSSCP00000023630   Gene: ENSSSCG00000027068   Transcript: ENSSSCT00000024301
Sequence length 393
Comment pep:novel chromosome:Sscrofa10.2:1:296000790:296002080:-1 gene:ENSSSCG00000027068 transcript:ENSSSCT00000024301 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
IGESAYKPSVLECMVNNFKKGFSRDYGVKLSPGKLCTLCTLEWPTFGVGWPPEGLYNVIT
GDPGHPYKFPYINQWLETAHLRSPWIQFCTTGQGQCMVLVAKSKKKTLSQKKRYWETKDS
PSMPPHYVLPAPPLGAEGPQMPDSLPPYVSPSPPAPEVPKAISHPQPDSPEPMSRCLQSA
QGEADPALQMPLYYQPFSTADLLNWKHHTPSYSEKPQALIDLLELIFQTHCPTQQLLFTL
FDNEECCQIVTEAQKWLQANAGCQADLANWIREDFPEENPHRDYDTEEGKCNLERYRHAF
LQGKSGAKRPTNIAKTSEILQEPNESPDKFYERLFEALRICTPFDPEVPQNHWMINAAFV
GQAQSDIHKKLQKLKGFAVKNATELLEIANKVF
Download sequence
Identical sequences ENSSSCP00000023630 ENSSSCP00000023630

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