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Domain assignment for ENSSSCP00000024778 from Sus scrofa 76_10.2

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Strong hits

Sequence:	ENSSSCP00000024778
Domain Number 1	Region: 203-332
Classification Level	Classification	E-value
Superfamily	Retrovirus capsid protein, N-terminal core domain	7.06e-55
Family	Retrovirus capsid protein, N-terminal core domain	0.00000283
Further Details:

Domain Number 2	Region: 1-103
Classification Level	Classification	E-value
Superfamily	Retroviral matrix proteins	3.83e-43
Family	MMLV matrix protein-like	0.00000739
Further Details:

Domain Number 3	Region: 473-516
Classification Level	Classification	E-value
Superfamily	Retrovirus zinc finger-like domains	0.00000000000598
Family	Retrovirus zinc finger-like domains	0.00083
Further Details:

Weak hits

Sequence:	ENSSSCP00000024778
Domain Number -	Region: 342-372
Classification Level	Classification	E-value
Superfamily	Retrovirus capsid dimerization domain-like	0.00366
Family	Retrovirus capsid protein C-terminal domain	0.0097
Further Details:

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by

Biological Process	IC (bits)	H-Score

Cellular Component	IC (bits)	H-Score

Molecular Function	IC (bits)	H-Score

External link(s)	Protein: ENSSSCP00000024778 Gene: ENSSSCG00000024446 Transcript: ENSSSCT00000026108
Sequence length	524
Comment	pep:novel chromosome:Sscrofa10.2:3:53617315:53618889:1 gene:ENSSSCG00000024446 transcript:ENSSSCT00000026108 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence	MGQTVTTPLSLTLDHWTEVRSRAHNLSVQVKKGPWQTFCASEWPTFDVGWPSEGTFNSEI ILAVKAIIFQTGPSSHPDQEPYILTWQDLAEDPPPWVKPWLNKPRKPGPRILALGEKNKH SAEKVEPSPRIYPEIEEPPTWPEPQPVPPPPYPAQGAVRGPSAPPGAPVVEGPAAGTRSR RGATPERTDEIAILPLRTYGPPMPGGQLQPLQYWPFSSADLYNWKTNHPPFSEDPQRLTG LVESLMFSHQPTWDDCQQLLQTLFTTEERERILLEARKNVPGADGRPTQLQNEIDMGFPL TRPGWDYNTAEGRESLKIYRQALVAGLRGASRRPTNLAKVREVMQGPNEPPSVFLERLME AFRRFTPFDPTSEAQKASVALAFIGQSALDIRKKLQRLEGLQEAELRDLVREAEKVYYRR ETEEEKEQRKEKEREEREERRDRRQEKNLTKILAAVVEGKSSRERERDFRKIRSGPRQSG NLGNRTPLDKDQCAYCKEKGHWARNCPKKGNKGPKVLALEEDKD
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Identical sequences	C0IV21 F6KPU1 F8S326 ENSSSCP00000019160 ENSSSCP00000024113 ENSSSCP00000024778 C0IV21_9GAMR ENSSSCP00000019160 ENSSSCP00000024113 ENSSSCP00000024778

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