SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for SSCA007978-PA from Sarcoptes scabiei

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  SSCA007978-PA
Domain Number 1 Region: 119-176
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000126
Family EGF-type module 0.025
Further Details:      
 
Domain Number 2 Region: 549-585
Classification Level Classification E-value
Superfamily EGF/Laminin 0.00000349
Family EGF-type module 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) SSCA007978-PA
Sequence length 588
Comment pep supercontig:SscaA1:JXLN01011511:18427:20243:1 gene:SSCA007978 transcript:SSCA007978-RA gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MISSRSSTSTSLDRSTKEELCSIGCNLGIAQAIKKLSQINPRKLAEKLIQWNQTEWCPPT
IQSSSSSSSSSSSSSSSFVQSSSSFLPPSKLNSLLTFNSAHSVCCDETIRLINRTIHWCD
LRPAPCQHNCHEILIENDNGLVINHINCSCWEGYQLDSDGRQCVDIDECQELTHDCNESY
EICSNTIGGYQCLPLSKQSLTRSPWIDLIDEHQNQKTRLMHQNHHECLPGFRYDLTKDQC
LDFDECSMIESDRINSNSNNIDYNNAAVLNANEDITKRFKNDCDHKTQVCINTIGSYRCE
TVGLECPQGFRRLSASNDFDTGCRDIDECHEGINNCDYLHEDCINVIGSFRCETKQSILM
VKTKKSSSKSSISKSMSRLNVTQSESKRYRSANFHSNQTSTSFKSIQSCPRGYHFVRSTL
QCEDINECEIGQHHCDLTYENCFNYPGRYKCLRKDRVREWDDLDESLLDYARDDKIRDEN
DRLKLFSSSSSSISSDRDALQKGLDQENSLLREHLDIEDFRSKQDHLDDDDSMKKSLQCS
DGFKLNPKLMICDDIDECLQHYPIACPSNSLCQNTIGSYRCHCKVSVL
Download sequence
Identical sequences A0A132A8P5
SSCA007978-PA

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]