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Domain assignment for YMR229C from Saccharomyces cerevisiae CLIB215

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YMR229C
Domain Number 1 Region: 1503-1724
Classification Level Classification E-value
Superfamily TPR-like 7.11e-38
Family HAT/Suf repeat 0.037
Further Details:      
 
Domain Number 2 Region: 1240-1345
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 3.58e-22
Family Cold shock DNA-binding domain-like 0.002
Further Details:      
 
Domain Number 3 Region: 1166-1252
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 2.98e-17
Family Cold shock DNA-binding domain-like 0.0051
Further Details:      
 
Domain Number 4 Region: 785-879
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.000000000000112
Family Cold shock DNA-binding domain-like 0.0099
Further Details:      
 
Domain Number 5 Region: 606-682
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.000000000000261
Family Cold shock DNA-binding domain-like 0.0051
Further Details:      
 
Domain Number 6 Region: 888-986
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.000000000111
Family Cold shock DNA-binding domain-like 0.031
Further Details:      
 
Domain Number 7 Region: 501-586
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0000000201
Family Cold shock DNA-binding domain-like 0.018
Further Details:      
 
Domain Number 8 Region: 1079-1161
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.000000109
Family Cold shock DNA-binding domain-like 0.02
Further Details:      
 
Domain Number 9 Region: 979-1070
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.000000127
Family Cold shock DNA-binding domain-like 0.017
Further Details:      
 
Domain Number 10 Region: 690-779
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.00000206
Family Cold shock DNA-binding domain-like 0.013
Further Details:      
 
Domain Number 11 Region: 111-152,198-246
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0000389
Family Cold shock DNA-binding domain-like 0.043
Further Details:      
 
Domain Number 12 Region: 322-409
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0000936
Family Cold shock DNA-binding domain-like 0.058
Further Details:      
 
Weak hits

Sequence:  YMR229C
Domain Number - Region: 237-304
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.000207
Family Cold shock DNA-binding domain-like 0.014
Further Details:      
 
Domain Number - Region: 1459-1503
Classification Level Classification E-value
Superfamily TPR-like 0.0031
Family HAT/Suf repeat 0.084
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) YMR229C
Sequence length 1729
Comment RRP5 ORF Verified RNA binding protein with preference for single stranded tracts of U's involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome
Sequence
MVASTKRKRDEDFPLSREDSTKQPSTSSLVRNTEEVSFPRGGASALTPLELKQVANEAAS
DVLFGNESVKASEPASRPLKKKKTTKKSTSKDSEASSANSDEARAGLIEHVNFKTLKNGS
SLLGQISAITKQDLCITFTDGISGYVNLTHISEEFTSILEDLDEDMDSDTDAADEKKSKV
EDAEYESSDDEDEKLDKSNELPNLRRYFHIGQWLRCSVIKNTSLEPSTKKSKKKRIELTI
EPSSVNTYADEDLVKSTFIQCAVKSIEDHGATLDVGLPGFTGFIAKKDFGNFEKLLPGAV
FLGNITKKSDRSIVVNTDFSDKKNKITQISSIDAIIPGQIVDLLCESITKNGIAGKVFGL
VSGVVNVSHLRTFSEEDLRHKFAIGSSIRCRIIACLENKSGDKVLILSNLPHILKLEDAL
KSTEGLDAFPIGYTFESCSIKGRDSEYLYLALDDDRLGKVHSSRVGEIENSENLSSRVLG
YSPVDDIYQLSTDPKYLKLKYLRTNDIPIGELLPSCEITSVSSSGIELKIFNGQFKASVP
PLHISDTRLVYPERKFKIGSKVKGRVISVNSRGNVHVTLKKSLVNIEDNELPLVSTYENA
KNIKEKNEKTLATVQVFKPNGCIISFFGGLSGFLPNSEISEVFVKRPEEHLRLGQTVIVK
LLDVDADRRRIIATCKVSNEQAAQQKDTIENIVPGRTIITVDVIEKTKDSVIVEIPDVGL
RGVIYVGHLSDSRIEQNRAQLKKLRIGTELTGLVIDKDTRTRVFNMSLKSSLIKDAKKET
LPLTYDDVKDLNKDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAVDSRDIDISKAFYI
NQSVTVYLLRTDDKNQKFLLSLKAPKVKEEKKKVESNIEDPVDSSIKSWDDLSIGSIVKA
KIKSVKKNQLNVILAANLHGRVDIAEVFDTYEEITDKKQPLSNYKKDDVIKVKIIGNHDV
KSHKFLPITHKISKASVLELSMKPSELKSKEVHTKSLEEINIGQELTGFVNNSSGNHLWL
TISPVLKARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDREHGFVNAIGKSHVDI
NMSTIKVGNELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFEDKINNVI
PTTVLSVDEQNKKIELSLRSATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKV
EAFVPVSKLSDSYLKEWKKFYKPMQYVLGKVVTCDEDSRISLTLRESEINGDLKVLKTYS
DIKAGDVFEGTIKNVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAI
VLKTNPEKKQISLSLKASHFSKEAELASTTTTTTTADQLEKEDEDEVMADAGFNDSDSES
DIGDQNTEVADRKPETSSDGLSLSAGFDWTASILDQAQEEEESDQDQEDFTENKKHKHKR
RKENVVQDKTIDINTRAPESVADFERLLIGNPNSSVVWMNYMAFQLQLSEIEKARELAER
ALKTINFREEAEKLNIWIAMLNLENTFGTEETLEEVFSRACQYMDSYTIHTKLLGIYEIS
EKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEV
VRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIIT
KKITRKQAKFFFNKWLQFEESEGDEKTIEYVKAKATEYVASHESQKADE
Download sequence
Identical sequences YMR229C

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