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Domain assignment for YPR189W from Saccharomyces cerevisiae LalvinQA23

Domain architecture


Domain assignment details

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Strong hits

Sequence:  YPR189W
Domain Number 1 Region: 130-255
Classification Level Classification E-value
Superfamily TPR-like 0.0000000000000873
Family Tetratricopeptide repeat (TPR) 0.013
Further Details:      
 
Domain Number 2 Region: 312-464
Classification Level Classification E-value
Superfamily TPR-like 0.0000000114
Family Tetratricopeptide repeat (TPR) 0.021
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) YPR189W
Sequence length 682
Comment SKI3 ORF Verified Ski complex component and TPR protein, mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay
Sequence
MRCSLDLYSQGFLLKSVSIAKDTIERIKIIITELKCENQQVWIYLSQVLRLFIWIESKVD
TLPVESLVSIFENSQFSGSEEIDSVDNIKIDTLLDSTTDDNVSIACKFLILASKYSVSDQ
KFTDIAGTVRASYWYNIGISELTAFITLKEPQYRDAAIFAFKKSIQLQSNTSETWIGLGI
ATMDINFRVSQHCFIKATALEPKATNTWFNLAMLGLKKKDTEFAQQVLNKLQSLAPQDSS
PWLGMALILEEQGDIIGSSKLFAHSFILSNGRSKAAQFMYAKNVLENHINNGDDERDIET
VEKLTTASIALEQFFKKSPDNQFALQCALLTLERLHHYENANELANRLIGILEKKFEKTQ
DERELFNFAIIKGQFARIHLGLGNFELSIENADLSQGIISESSDEKSMKTKISNHICLGL
SYFFLNDFDQTLNQFQELLSISKDSKHLVVLIAKVLYDVGESDTKEIALQELTEYIATSG
ADLLVTLTIAAMSILDDKREDLSIILEELKALPLSKQIIDKHKDAPYLIEEITKRLYRND
TGKQVWQRSAYFFPNNLKVWERLDKNIQRRIASNGQNKVTAEEMSKLYCESKNLRSIQRG
MFFVPLERYCSEGAKRMFLKIWIRDSQSNLNVTLVINFIFSIEYKRLLDRVYQLYRVIMP
FGKLPKAIATSINERKHLALFH
Download sequence
Identical sequences YPR189W

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