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Domain assignment for symbB.v1.2.008824.t1|scaffold533.1|size203693|3 from Symbiodinium minutum clade B1 v1.2

Domain architecture


Domain assignment details

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Strong hits

Sequence:  symbB.v1.2.008824.t1|scaffold533.1|size203693|3
Domain Number 1 Region: 1335-1448
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.00000000000000728
Family Retroviral integrase, catalytic domain 0.011
Further Details:      
 
Weak hits

Sequence:  symbB.v1.2.008824.t1|scaffold533.1|size203693|3
Domain Number - Region: 1685-1761,1795-1856,1897-1918
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 0.0008
Family Reverse transcriptase 0.047
Further Details:      
 
Domain Number - Region: 584-605
Classification Level Classification E-value
Superfamily CCCH zinc finger 0.00112
Family CCCH zinc finger 0.0057
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) symbB.v1.2.008824.t1|scaffold533.1|size203693|3
Sequence length 2352
Sequence
MEEEVVLARRQPRALEDGREVEDRMTLPPLMDEVGGTSVEASHGEREGRMVRVVKKVEDV
RSSTELRDEEGGKKERERGEREVTQEEPSTQTPARFSMATPPSDQQEPEPSEGWMEGPTG
LPRMLGPVLDQTQARRMEEMQNQSPLIYTRKAEEQLVQGLRPEFLEEERKKIEERELRKR
VEDLAEENVKLRDMMKDVERVIQENTEMRSQVQKMKTEKELEKVPERSVERIREKIQFST
PEEPNPAAREANREENPVNQPGKPRPETQPDAVQVMLTLMQGMQEMQKRMIEREEKGEEG
LSMKGVEFVRGQPELPKLADWAAGTAPIDLNDWLVLIEPIMADLTPTSQEWWEILLQESR
EWYDLHMSKTPMERLSHEPSPSPELARKRWSRLEKRASTMLLMGIPEAQREELIATKRVT
AKGIICRLLTVYQPGGLAEKEVILRSLEAPAEAVSLPEAVAGLRKWMRWRNRARELGVSE
PDASILLRGLGKIVKRPLESNRDLSFRVNLTRSMLQVDSTPSSTNVHQFATHLLAEMEVL
AHTEGAKKVGAAREVPKPIDPRIKKTEVDEKFSKKEGGREGQQPCRFFNTDTGCRKGKEC
RWSHVVEEGKRRCWVCGAVDHFAGACTRPREGRGASDGKKGWGKGEGKSVQKAEGEAPPK
NGGREAPGRDGESVRSEESGEVMKNLLEEANRMLRGIQDSKGEEGNEKEARIQKLQRQLD
ELKAIRVFRIASLSAGSGHGLLDSGATHSLRGKHRADCMAQMQEVKVNLACGRDTMLRMT
KGGTMVALNPNTEPIVPLGKIVDELGCRVGCPEGITVVHPRRGRLEVYEKDGCPHVTQEV
ALGLIEELEEKERRRIRRMVVDDEEKEKKWIEELVDVHPALVSLPAEVKRSLVVKPSKDL
KPLPGLNKRGRKRAARDGLVVHLYAGPKEGFTLSRAAKEVGAQENEILEVDVVRGDDHDM
LQEAPYNALLRLALDGNLVGLVGGPNCRTRSVLRHYPIEGAEGGGPRPLRAWGGEEFGKK
DLKPDEAARVWEDDVLMWRMITLYIIAEHVKRASREGEKESEVSSVWFGMEQPANPVYKP
EVVSIWETPQWKKLQEVYRFSTWTFNQGDWGADAVKPTTWGGNLPLQLPQQRNPKAKSRG
EDGSLKDSKRLARWCQGMMREVASSLQKNVWRRDVKIKKLSWEEHLRNGHLPFRKDCRIC
QEASAKSSPHRRVVGRDVVGGAARFLLVGAFTWILPKDSGMKEEKIEEKDQEGEEEEAEV
EEMMIFEEEEEEEEVEEGQKKKRGRPRKVEPEEERMEGYEELMQKKDQPEVDEEKKDEDP
EDQPPDDFEVKVFRMMIPMETKTGEEVLRCVAEMVTRLHLEGFQVQQLHSDHGGEFTGRM
LQKWVMNRGIARTFTGVSDPQSNGRVENSVQQVKSYLRRVLLQARLPSTSWPLAGRYLNE
VMRHDRLGMKKDFPPFWTEVLVKKRRWDTHQVEPRMEKVRYVSPSPWNYGHWVQKEDGSY
VVSRFVITYTEAPIKEEAWIALEDQGRNPMEVRRRIRGKVSVKKLERAREEEDEEDSENE
RPGNQRIMKVIEEEMTTIMGETDQDQMEVTLEMVARLRKMIEENPEEEVLQTRIVGVNEV
MMKKEDWRRPIEDELRSLVEEKEALVPLRGEAKEDFFKKAHKKEGRLSTGDAVVLRIMMK
LASERGWEGMSLDVKTAFLNAPWEDLDVLVRPPAVVVKMQLVDPDVLWLPTRALYGFRKS
PKLWGNYRDATLRRKRFKLEEKEFEMVQFTSEPNLWRIQEAGEEDWSEEKSPLRALMMVY
VDDVFAVGEGPVLKALIGCIQQEWKTSDPEWVSGKPVRFLGMEIQKEEAEEKKGSCWKAS
QVNYTKDLLRRNLGEDEKKWIKRKIPMTRDGPTEIQRPPTPEEVREAQRVTGELLWLVTR
SRPDLMFPVSKMSAKVLHNPTWVVEAAHQVWGYLANTEEDGLLYQPSEEMKPWEEGAGLQ
AFSDASFSPGGEESHGSIVITLRGGLLVWRSAKQSTVTLSTAEAELNEVIEGLMLGESVA
AILEEIDQGLKKEMISDSQAAVNICMAEGGSWRTRHLRLRASHARQRFVKGDWVLRHCPG
EEMLADIGTKPLASTRLNYLKELMGMTSRKKGEAREDVEEEKERLEEKTQEKKDIPQVEM
MLKMVVLLASFQSTRAQGKNEEDEGVGWVVVVVAWGVFLMVVGLVAIIRWTMNIIRMMVG
EKEKREPEEEPQDEGEEETGEGRRMRRRVTSNPQSREETPLPSPVPNVRREGGVLFTPSP
PSSGQRDGRPGSSADGTAPFPNLPPFPSNEIPIPPGEEPALENYRVGLQAFSRPSTGWRN
QHTRSFVSACWE
Download sequence
Identical sequences symbB.v1.2.008824.t1|scaffold533.1|size203693|3

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