SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for symbB.v1.2.030050.t1|scaffold3346.1|size69245|5 from Symbiodinium minutum clade B1 v1.2

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  symbB.v1.2.030050.t1|scaffold3346.1|size69245|5
Domain Number - Region: 197-264,300-360
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 0.0064
Family RNA-dependent RNA-polymerase 0.083
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) symbB.v1.2.030050.t1|scaffold3346.1|size69245|5
Sequence length 842
Sequence
MSGLYYYIEKWLNTTGIIVTSDYDFGTGRKKKGLLGTTAVGPNVNVTAQQIRQILVEFGV
SGSDGPPIDIRTDAATDVGELLRRSAINREFTLSRAGPQEHNVIGSAERGVREVKEAIAV
ARLELAKHQLDIVDSLVGWDGICRYVVAMHNLHGKKFGKTPRELLRDSPASKENPVGLAC
STTEPCLYGGVIDGSPTLLLCYVDDLLIASSTDKAFHRVFKELSKHVKVRETGRIALGKD
GGGSLKFLGRVISRRAGFPSLVMQVDPSYMDAACEEFGIKVPKGVVGPPDIKPNLEATSE
ESPISPEAHSRYRRVLGRLAWLAQTRMDLLHYTSLLASGQSEPKPGHEKALRQVLRFVAT
DSHAIYQWQGFNWAGPNFGLCAEEPERHIEIRLCWLRRLLNSSILELTFCRGDMNLSDMF
TKCVSQALFQSFRTALGFLLNDLRLSVVISGSEKQKALDDEEESESLRDLEGKPLGKTSK
LTQRVFQVFQLRESFQRGRRCMLCDDVIEDDLLVEGEGEVLNSVSPSAAVVGSAASSLSG
VTLTVGVMSSSSDKDEDRRSVREAREEAMAKEGFPDAKESKKKRRRREKKKKGKTPGDES
KVEKSKEDEMEEVKKDHLKQKVDKGKKGKGKGEKGKGKDKGKGKKGKGKGEVASPSKPRS
RPSEPPIPPPAPVAGLGSTSRNVMADQAQAGLAGIAKRWSTDKPFVAVSGDPDHPDPQWV
EKQQKELKEKMRKEIQDYEDEKSKKLRRAQGKEEESSSTESGSTDSEDDDEVSKTAKKVG
IAVESFKRKSGVTEAGKRMLDQTLDEIVSQFLQSPSMMSQRIMIASWKLAKLVLVAAELI
RT
Download sequence
Identical sequences symbB.v1.2.030050.t1|scaffold3346.1|size69245|5

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]