SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Sopim03g098580.0.1 from Solanum pimpinellifolium A-1.0

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Sopim03g098580.0.1
Domain Number 1 Region: 519-683
Classification Level Classification E-value
Superfamily TPR-like 0.0000835
Family Tetratricopeptide repeat (TPR) 0.057
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Sopim03g098580.0.1
Sequence length 723
Sequence
MCMGEAEGKLRYVLISEHGLQLWVLKDHFTSQWDLTFTISLELLEKENDKYLFKIAEKLA
RDYNSAYPWIGTLAFKNNILLMRVAADIYLYQFDTMKMRHLCSLSALAPKPFFSATVVPY
TMSLVPLMIPSKLKKLIPLPEILIGIHNETSFSKFTTKKNYRASVIWDKNQEEEEVKYLN
ILRQCVATSRLDNAKAIHAKLLKNPGGTSLLYLHNHLLNAYVKCGDTAKGLKLFDEMTDR
NVVSWTALIAGFVQNGFPLEAFSLFSCMHRSGTKPNEFTFVSALHACSFEDRLSLTNAYQ
VYGLITRLGFESNVYLVNAFLTTLIRHGRLDEALMVFEWCSNKDIVTWNAMLGGCMQFCC
SDVPRLWYRMIHKGVVPDNFSFASVLTGLAELFVLDLGVQVHSQLVKSGHGSEMCVGNAL
VDMYLKNRCLGEGFKAFEEICFKDVCSWTQMAAGCLNCDEPIEALRVIGEMRREGVMPNK
FTLATAFSACANTASFREGEKVHGLRIKLGDDIDVCVDNALLDMYAKCGCMDGAFMVFQS
MDEHTTVSWTTMIMGYAQNGYPKKALEIFHQMREEGADPNYITFLCVLYACSQGGLIDEG
WKYFTSMSDDYGILPGEDHYACMVNLLGRVGRVREAEELISSMPFQPGLLVWQTLLGASR
LHGDMETAKRAAERALQVDKVDPSIYVLLSNTFAGLQNWDGVGTVRELMHSRDVKKVPGS
SWF
Download sequence
Identical sequences Sopim03g098580.0.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]