SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|427724480|ref|YP_007071757.1| from Leptolyngbya sp. PCC 7376

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|427724480|ref|YP_007071757.1|
Domain Number 1 Region: 7-260
Classification Level Classification E-value
Superfamily Pectin lyase-like 4.36e-35
Family Pectate lyase-like 0.086
Further Details:      
 
Weak hits

Sequence:  gi|427724480|ref|YP_007071757.1|
Domain Number - Region: 398-499
Classification Level Classification E-value
Superfamily Nucleotide-diphospho-sugar transferases 0.0187
Family Cytidylytransferase 0.069
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|427724480|ref|YP_007071757.1|
Sequence length 693
Comment parallel beta-helix repeat-containing protein [Leptolyngbya sp. PCC 7376]
Sequence
MAMMQQKLYVNPEIGDDENSGSQENPLRTISTAIKRSTSDCVIHIAAGNYTRKRGELFPL
ILPSGVQLIGDVASQGHSVTIRGSGIYNSDRLKTQNVAIAMLSGSALKGVTVINLERKGT
GVWIEEGRVEIENNCFQHCRREAIFAAGTSKALIFDNLFLDNKGNGIFMANNAKGEICHN
QFQGNQYAIALNEQAAPFIAHNRIAQNQIGIFIAKQTQPVLRRNLIENNHDFGVVISGNA
QPDLGLTQDPAGNIIRQNLEADLRNKTDDVIVSVGNDLNPVTTAGMVEFAAATVPITKMG
MTPFRDVLSHWAEPFIQVLVENRYLQGFPDGTFRPDAPLTRAEYAALLARCFDLPRPLGV
QDAEFADIASDFWGKNAVTKAVTMGFLVGYPDDTFRPQAPLTRLQAIISLAKGLGLKDGN
PKVLQAYGDRPLIPSYALNSVAVATQNRLVVSYPKTDRLQPLHDITRGEIAALLHQALVI
NQKLPLLNSEHIVEPLPYLPTFSDVTYHWAKPFVTAIANLGLVQGYKDGSFRPDAPLKRA
EFAALLSDIFAPNPVRPAKNFFDIPADFWAATAIQQAYRGGFLSGFPDQTFHPHQGLRRV
HVILALANGLNLPSAPQSVSLNQYLDVNEIPEYANEAVAASTQAGLIVNYPDPKILNPNG
EATRAEVIALCYQALVYLQRAAPVDSTAIVNVT
Download sequence
Identical sequences K9Q0N1
WP_015134677.1.56710 gi|427724480|ref|YP_007071757.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]