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Domain assignment for Tc00_g009110 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g009110
Domain Number 1 Region: 335-675
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.6e-123
Family Reverse transcriptase 0.000035
Further Details:      
 
Weak hits

Sequence:  Tc00_g009110
Domain Number - Region: 840-919
Classification Level Classification E-value
Superfamily Chromo domain-like 0.000893
Family Chromo domain 0.016
Further Details:      
 
Domain Number - Region: 210-299
Classification Level Classification E-value
Superfamily Acid proteases 0.000984
Family Retroviral protease (retropepsin) 0.064
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Tc00_g009110
Sequence length 928
Comment Retrotransposon protein, putative, Ty3-gypsy sub-class
Sequence
MEKICKALGCSSVRSIKGRPKDAAPLTWSEFSITLLDQFLPLSARNAKAREFKALVQTSS
MTVSDYDIKFTQLSRHAPYLVSKEEMKIQRFMDGLVEPLFRAMASRDFSTYSTVVDCAQR
IEMRTSESRVVKDRAKRAKTEGYQGRMDFSSGISSSSRQVVTPSNRKANGSRGRGVVTSS
QGKPSGSGRQNFAGRGQARVYALTPQEDQTSNAVVSGTLFVCNMNARVLFDPCATHSFIS
PRFASRLGKDYVRREEQLVVSTPLKEDKDTLVNLVVLDTFDFDVILGMDWLLLCHASVDC
YHKLVRFDFLGEPSFSIQGDKSNAKVRDISQVLVVNKFMDIFLEELPSLPPEREIEFCID
LILDTRPISILPYKMALVELKELKDQLEDLLDKGFICPIVSPWGALMLFVKKKDGSLRLC
IDYQQLNKVTVKNKCPIPRIDDLFDQLQGAQCFSKIDLRSGYHQLRIRNDNIPKTAFQTR
YGHYEFFVMSFGLTNAPATFMDLMNRVFKSYLDKFVVVFIDDILIYSRSREKHEQHLKIM
LQTLREHRLYAKFSKCEFSLESVVFLGHVVSKDVVQVDPKKVKAVEKWPRPTSVMKIRRF
LGLAGYYRRFMKDFCKIVAPLTKLTRKDTKFEWSNACEGSFEKLKACLTTTLVLSLPQGT
RGYTVFCDITRQPVTRIRCPCRLVSNFWYVSRHLVTVHSSESLRWKSMEFAYNNNFQNSI
QMALFEELYGQRCRSPIGWLEVGERKLLRLELVEDTTENIHMIRQRMLSAQSRQKSYADN
RRRDLEFQVGDHVFFMVSPTKGVMRFGKKGKLSPRYIRPFEILERVGAVAYRLALSPNLS
NIHPMFHVSMLRKYNPDPSNVIRYETIQLKDDLTYEDQPVAIFDRQVKKLRSKDVALVKV
LWRNHTSEEVKWETEDEMRIKYPHLFNV
Download sequence
Identical sequences Tc00_g009110

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