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Domain assignment for Tc00_g014741 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g014741
Domain Number 1 Region: 41-160
Classification Level Classification E-value
Superfamily Ribonuclease H-like 3.64e-24
Family Retroviral integrase, catalytic domain 0.026
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Tc00_g014741
Sequence length 685
Comment Putative Retrovirus-related Pol polyprotein from transposon TNT 1-94
Sequence
MHTISKLLRKNLVIGLPKISFENDKVCDACQFGKQVKSSFKTKKLYGFVIVDNCSRYTWV
YFLTHQDDTLSIFIKHCKGVKNKKGLTIVSIRSDHSGEFESGNFEIFCNENDCDHNFSTH
RTPQQNEVLKRKNKTLKEMARVMLCENDLPKYFWAEVLNFINKKHTLGKFDAKSDEAIFL
GYALNSKAYRVFNKRTLVIEESIYIVFYETNAKMEKMSLDNKENDGESLKEKDDDEPPLK
DFKELKNNTTIFLENVEEVEKEKSWIIVMQEELGQFESNKVWSLVSRPTNHPIVGTKWVF
KNKMDKLGNVVKNKARLVAQRHNKKKRLYKNFQCEDGIFINQEKYTKVILKKFGRMDMKS
IGTLMSRSTKLDKNDTRKDVDQKLYRGMIGSLLYLITTRPNILFSVCLCVRFQSCPKESP
LIIVKRISRYLLDTQGLAEYISLGSCCVQILWIRQQLNDFGMAMHKIPIYCDNMSAINIF
KNPVQHFRTKHIEIKHHFIQDHGIKGNIEINFVDTLHQLANIFTKPLSEEQFCRIRRDLG
MIDVNESILFSVCLFARFQSSPKESPLITIKRISRYLLDTQGLGQWYPKGSSFNLFGYSD
ANFAGGKIDRKNTTEYISLGSCCVQILWIRQQLNDFGMAMHKIPIYCDNMSAINIFKNPV
QHFRTKHIEIMSSPALQYVYYTILT
Download sequence
Identical sequences Tc00_g014741

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