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Domain assignment for Tc00_g037592 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g037592
Domain Number 1 Region: 290-460
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.64e-34
Family Retroviral integrase, catalytic domain 0.0083
Further Details:      
 
Domain Number 2 Region: 27-57
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.00000015
Family Retrovirus zinc finger-like domains 0.0048
Further Details:      
 
Weak hits

Sequence:  Tc00_g037592
Domain Number - Region: 571-661
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 0.000222
Family Reverse transcriptase 0.047
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Tc00_g037592
Sequence length 727
Comment Putative Copia protein
Sequence
MEQKGKKFKRKTYKKDQSPFRKNKYKGDFSKNDEMVCFKCKKPGHFRSECPLLKEETSKK
IKTKTKRAMVATTWFDSDTPSSEEEKERLKERANFCLMAMKEEIEVERGQNDQCFEAQPK
KRQPWYLDSDCLRHMTENENLFAKLDRSKSGSVSFNDGSKGVIQGIGTIGNLSQTQIKHV
LFVKSLKHNLLNISQLCDRGFRVCFDSYGCQVINVNTNKVAFIGKRIKNTWLWHRRLGHA
SMHTISKLLRKDLVIGLPKISFENDKVCDACQFGKQVRSIFKLKKIISTSRPLELLHIDL
FRPIIVASLRSKSYSFVIVDDYSRFTCVHFLAHKDDALSIFVKHCKRVQNEKSLTIVSVG
SDHGGEFESDNFEIFCSENGLEHNFSASRTPQQNGVIKRKNKTLKEMARTMLCENNLPKH
FWAEVASTAAYILNKVSIRAMISKTPYELYKGRKPNISYLKTIFLGYVLNSKAYRVFNKR
TLVIEKSIHIVFDETNAAQRKEVLDDDDADDIEKKMEKMSLDIGKCGNNKARLVTQGYNQ
EEGIYYDETFALVAKLEAIRLLFSYACFMKFKLFQMDVKSAFLNALCGLKQAPTAWYERL
SKFLIEKGYSGGSVDNTLFIKKIENDLIVVQIYVDDIVFGATNERLCENFKYIKEMLKKF
GGMNMKSIETPMSPSTKFDKDDKGKDMDQKHYRSMIGSLLYLIASRLISYLVYAYVQDSN
HVPRDHI
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Identical sequences Tc00_g037592

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