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Domain assignment for Tc00_g055031 from Theobroma cacao B97-61/B2 v1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Tc00_g055031
Domain Number 1 Region: 281-688
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.33e-151
Family Reverse transcriptase 0.0000408
Further Details:      
 
Domain Number 2 Region: 828-953
Classification Level Classification E-value
Superfamily Ribonuclease H-like 5.06e-20
Family mu transposase, core domain 0.056
Further Details:      
 
Domain Number 3 Region: 1039-1120
Classification Level Classification E-value
Superfamily Chromo domain-like 0.0000225
Family Chromo domain 0.011
Further Details:      
 
Weak hits

Sequence:  Tc00_g055031
Domain Number - Region: 127-214
Classification Level Classification E-value
Superfamily Acid proteases 0.000625
Family LPG0085-like 0.061
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Tc00_g055031
Sequence length 1127
Comment Putative retrotransposon protein, identical
Sequence
MTVSEYDIKFTQLSRVAPDLIFTEEMKIQRFVDGLVEPLFRAVASRDFTTYFAAVDYAQH
IEMRTSESRATRDRAKRAKIEGYQGRRDFSSGGSSFSQVRVFALTQQEAQTSNAMVSGIL
SICAINAWVLFDPSATYSFISPCFASRLGRDRVRSEEQLVVFTPLKEIFVAEWEYESCVV
RVKDKNTSVNLVVLNTLDFDMILGMDWLSPCHASVGCYHKLVRFDFLGEPSFSIQRDRSN
APTNLISVISARRLLRQGCIGYLAVVRDTQAKVGDVSQVSVVKEFVDVFLEELLGLPPER
EIEFCINLIPDTRPISIPPYRMAPTELKKLKDHLEDLLDKGFIRLNVSPWGAPVLFVKKK
DGSLRLCIDYRQLNKVTMKNKYPLPRIDDLFDQLQGAQCFSKIDLRSRYHQLRIRNEDIP
KTAFRTRYGHYEFLVMSFGLTNALAAFMDLMNRVFKPYLDKFVVVFIDDILIYSKSREEH
EQHLKIVLQILREHRLYNGIQVDSKKIEAVEKCPRPTSVTEIRSFVGLAGYYRRFVKDFS
KIIAPLTKLTRKDTKFEWSDACEDSFEKLKACLTAAPILSLPQGTGGYTVFCNASRVGLG
CVLMQHRKVIAYASRQLKRHEQNYPVHDLEMAAIVFALKIWRHYLYGETCEIYTDHKSLK
YIFQQRDLNLRQRRWMELLKDYDCTILYHPGKANVVADTHSLGDIGVHLEVMKTDALLAH
FRVRPILMDRIKEAQSKDDFVVKALEDPQGRKGKMFTKGTDGVLRYGTRLDVPDGDGLRR
KILEEAHMAAYVVHLGATKMYQDLKEVYWWEGIKRDVAEFVSKWLLQPLPVSEWKWKHIA
MDFVTGLPRTSRGYDSIWILVDRLTKSAHFLLVKTIYGAAQYTQVYVDEIVRLHGIPISI
VSDRRSERTIHTLEDMLRACVIDLGVRWDQYLPLVEFVYNNSFQTSIQMAPFDALYGRRC
RSPIGWLEVGERKLLGLELVQDATEKILGDHVFFKVSSTKGVMRFGKKGKLSPRYIGPFE
ILERVGVMAYRLALLPVLSNIHPVFHVSMLRKYNLDPSHVIRYETIQLQDDLTYEEQPVA
ILDRQIKTLRSKEVASVKVLWQNHTSEEVTWEAEEEIRTKYPHLFDT
Download sequence
Identical sequences Tc00_g055031

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